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. Author manuscript; available in PMC: 2018 Mar 1.
Published in final edited form as: Neurobiol Dis. 2017 Dec 21;111:102–117. doi: 10.1016/j.nbd.2017.12.015

Table 1.

ISHH probe design.

Target mRNA Riboprobe length PCR primers Nucleotide target GenBank mRNA accession #
PPE 817 bp Sense: 5′-TTCCTGAGGCTTTGCACC-3′ 312–1128 001002927
Antisense: 5′-TCACTGCTGGAAAAGGGC-3′
PPT 900 bp Sense: 5′-TCGAACATGAAAATCCTCGTGGCC-3′ 95–994 D17584
Antisense: 5′-CACATCATACAATGACTGAAGACC-3′
D1 694 bp Sense: 5-CTCATAAGCTTTTACATCCCCG-3 1116–1809 NM_010076
Antisense: 5-GAGACATCGGTGTCATAGTCCA-3
D2 1086 bp Sense: 5′-GAAGATCCTGCACTGCTGAGT-3 1412–2497 NM_010077.1
Antisense: 5′-ATGTTACAGAGTTGGAGCCCAG-3′
BDNF 920 bp Sense: 5′-GGCGCCCATGAAAGAAGTAAAC-3′ 715–1634 MN_007540
Antisense: 5′-CGGCAACAAACCACAACATTAT-3′