Table 2.
Sequence identity comparisons between the ZYMV-Kurdistan isolate and the corresponding genome regions of other ZYMV isolates at the nucleotides and amino acid (in parentheses) level
| Isolates | Accession numbers | Genome regions | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5´UTR | P1 | HC-Pro | P3 | P3N-PIPO | 6K1 | CI | 6k2 | VPg | NIa | NIb | CP | 3´UTR | Poly protein | ||
| 10itSDE | KT59822 | 87.5 | 87.7 (85.3) |
91.7 (97) |
92.3 (96.2) |
93.2 (96.4) |
90.8 (100) |
93.6 (98.5) |
91 (95.9) |
94.8 (98.8) |
92 (98.2) |
94.8 (97.4) |
93.8 (98.5) |
95.4 | 92 (96.6) |
| Kuchyna | DG124239 | 97.1 | 97.2 (96.5) |
98.2 (97.9) |
98.7 (98.5) |
98.4 (98.7) |
99.3 (100) |
98.8 (98.6) |
98.7 (100) |
98.5 (98.8) |
98.7 (99.1) |
99.3 (99.2) |
98.5 (97.8) |
98.5 | 98.5 (98.4) |
| SE04T | KF976713 | 97.1 | 97.5 (97.2) |
98 (97.7) |
98.9 (98.5) |
98.7 (98.7) |
99.3 (100) |
99 (99.2) |
98.7 (100) |
98.7 (99.4) |
99.2 (100) |
99.4 (99.2) |
98.7 (98.2) |
99 | 98.6 (98.7) |
| H | KF976712 | 96.3 | 97.3 (97.2) |
98.2 (98.1) |
98.8 (98.5) |
98.4 (98.2) |
99.3 (100) |
98.9 (99.2) |
98.7 (100) |
98.7 (99.4) |
99 (100) |
99.4 (99.4) |
98.7 (98.2) |
98.5 | 98.6 (98.8) |
| B* | AY188994 | 98.5 | 98 (97.9) |
98.9 (98.8) |
98.8 (98.5) |
98.5 (98.2) |
97.1 (97.5) |
99 (99.2) |
98.1 (100) |
98.7 (99.4) |
99.3 (100) |
99.4 (99.4) |
98.8 (98.5) |
98.5 | 98.8 (99) |
| IKA | KU528623 | 93.4 | 98.7 (97.2) |
97.6 (97) |
97.8 (96.6) |
97.3 (94.5) |
98.6 (100) |
95.7 (98.3) |
98.7 (98) |
95.8 (94) |
98.4 (97.8) |
99 (98.6) |
91.3 (87.7) |
99 | 96.9 (96.6) |
| SANRU | KU198853 | 94.9 | 96.4 (95.1) |
98.5 (98.6) |
97.6 (97) |
98.5 (99.1) |
97.8 (95) |
98.5 (97.6) |
99.4 (100) |
97 (97.6) |
98.4 (99.1) |
98.9 (98.8) |
99 (99.3) |
96.4 | 98.1 (98) |
| AP Gherkin | KT778297 | 93.4 | 96 (94.7) |
97.9 (98.4) |
98.4 (98.1) |
98.7 (98.7) |
97.8 (100) |
98.4 (98.6) |
98.7 (100) |
97.4 (99.4) |
98.6 (99.6) |
98.9 (99) |
98.1 (98.9) |
97.5 | 97.9 (98.4) |
| Fars | JN183062 | 96.3 | 95.7 (92.9) |
98.2 (99.1) |
98.3 (98.5) |
98.7 (99.1) |
97.1 (97.5) |
98.8 (99) |
99.4 (100) |
98.5 (98.8) |
98.2 (100) |
98.9 (98.8) |
99.3 (99.6) |
98 | 98.2 (98.5) |
| PA_2006 | JQ716413 | ND | 97 (95.5) |
97.9 (98.6) |
97.6 (97.4) |
97.2 (96.8) |
96.4 (92.4) |
98.1 (98.8) |
98.7 (100) |
97 (99.4) |
94.7 (99.1) |
96.2 (97.8) |
94.5 (98.9) |
ND | 96.4 (98.1) |
| TW-TN3 | AF127929 | 83.1 | 94.2 (94.7) |
93.3 (97.7) |
91.7 (97) |
93.2 (95.5) |
94.1 (100) |
92.6 (98.1) |
94 (98) |
95.8 (98.2) |
96.1 (100) |
96.2 (98) |
93.2 (97.8) |
95.4 | 93.5 (97.7) |
| KR-PS | AY279000 | 85.3 | 90.9 (91.1) |
93.5 (98.1) |
92 (95) |
91.9 (93.1) |
91.6 (100) |
91.7 (97.3) |
93.2 (95.9) |
92.7 (99.4) |
93 (100) |
95 (98) |
93 (97.1) |
95.5 | 92.2 (97.1) |
| KR-PE | AY278999 | 86 | 91.3 (90.7) |
93.6 (98.1) |
91.9 (95) |
91.6 (92.6) |
92.4 (100) |
91.4 (96.9) |
93.2 (95.9) |
92.7 (99.4) |
93 (100) |
95.1 (98.2) |
93 (97.1) |
95.5 | 92.2 (97) |
| KR-PA | AY278998 | 83.1 | 91.8 (90.3) |
93.4 (98.6) |
91.9 (97) |
92.8 (95.5) |
91.6 (100) |
90.5 (97.1) |
92.5 (95.9) |
90.7 (98.8) |
93.5 (99.6) |
95.3 (97.4) |
92.5 (96.7) |
97.5 | 91.9 (97) |
| AG | EF062583 | 98.5 | 97.9 (97.6) |
98.7 (98.6) |
98.9 (98.5) |
98.7 (98.7) |
97.1 (97.5) |
99 (99.2) |
98.1 (100) |
98.7 (99.4) |
99.4 (100) |
99.2 (99.8) |
99 (98.5) |
98.5 | 98.7 (98.9) |
| NAT | EF062582 | 98.5 | 97.9 (97.6) |
98.8 (98.8) |
98.9 (98.5) |
98.7 (98.7) |
97.1 (97.5) |
99 (99.2) |
98.1 (100) |
98.7 (99.4) |
99.4 (100) |
99.3 (99.8) |
99 (98.5) |
98.5 | 98.8 (98.9) |
| 2002 | AB188116 | 87.5 | 89.4 (87.3) |
91.5 (97.2) |
92.4 (96.6) |
93.5 (95.9) |
93.3 (100) |
97.1 (98.8) |
97.4 (98) |
98.5 (98.8) |
97.2 (99.6) |
96.2 (98.6) |
95.3 (98.9) |
97 | 94.6 (97.3) |
| Z5-1 | AB188115 | 87.5 | 89.4 (87.3) |
92.1 (98.1) |
92.7 (96.6) |
93.5 (95.9) |
93.3 (100) |
97.1 (98.6) |
97.4 (98) |
98.5 (98.8) |
97.2 (99.6) |
96.9 (98.8) |
95.1 (98.9) |
97 | 94.6 (97.4) |
| RDA | AB369279 | 85.3 | 92 (91.1) |
93.6 (98.4) |
90.6 (95) |
92 (93.1) |
90 (97.5) |
91.2 (97.4) |
93.2 (95.9) |
90.5 (97.6) |
93.1 (99.1) |
95.1 (97.8) |
89.9 (95.6) |
95.9 | 91.7 (96.7) |
| Singapore | AF014811 | 76.9 | 44.3 (48.5) |
76 (88.5) |
88.4 (92.6) |
92.2 (92.7) |
86.3 (97.5) |
84 (95.9) |
80.6 (93.8) |
82.4 (96.4) |
84.8 (96.9) |
89.2 (95.3) |
85 (91.7) |
97 | 79.6 (90.1) |
These comparisons were obtained in MEGA6 program using p-distance method
Nd not determined