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. 2018 Feb 1;51(Pt 1):193–199. doi: 10.1107/S1600576717015825

Table 1. Performance test – the wall time of a single calculation of structure factors and their derivatives at 5/6 Å resolution.

Structure ID code QANQIG 3p4j 1ejg 4q4g 1f8b
Space group P212121 P212121 P21 P212121 I432
No. of atoms 169 586 942 3461 5916
No. of atom types 20 42 40 62 54
No. of reflections§ 6490 23837 31597 153346 458685
Relative computational cost 4.4 55.9 59.5 2122.9 65125.9
 
Execution wall time
Time units ms s s s min:s
Intel Xeon E5-2697 v3          
1 core 515 8.7 10.1 310 105:21
4 cores 126 2.18 2.57 78 26:24
14 cores 37 0.63 0.74 22 7:43
NVIDIA Tesla K20 100 0.45 1.28 10.6 3:59
NVIDIA Tesla K80 60 0.3 2.97 7.3 2:53

The CSD refcode in the case of QANQIG and the PDB ID in the other cases. QANQIG – 10 residue peptide (Aravinda et al., 2004); 3p4j – Z-DNA hexamer duplex d(CGCGCG) (2) (Brzezinski et al., 2011); 1ejg – crambin (Jelsch et al., 2000); 4q4g – peptidoglycan endopeptidase RipA (Squeglia et al., 2014); 1f8b – complex of native influenza virus neuraminidase (carbohydrate chains and solvent water molecules removed; Smith et al., 2001).

Structures were parametrized with the use of the UBDB bank (Jarzembska & Dominiak, 2012) and the LSDB program (Volkov et al., 2004) supported by manual interventions in the case of disordered parts.

§

The lists of reflection indices were generated with the help of cctbx (Grosse-Kunstleve et al., 2002).

Equal to No. of symmetry operations used in calculations times No. of reflections times No. of atoms (in millions).