Table 1. Performance test – the wall time of a single calculation of structure factors and their derivatives at 5/6 Å resolution.
| Structure ID code† | QANQIG | 3p4j | 1ejg | 4q4g | 1f8b |
|---|---|---|---|---|---|
| Space group | P212121 | P212121 | P21 | P212121 | I432 |
| No. of atoms | 169 | 586 | 942 | 3461 | 5916 |
| No. of atom types‡ | 20 | 42 | 40 | 62 | 54 |
| No. of reflections§ | 6490 | 23837 | 31597 | 153346 | 458685 |
| Relative computational cost¶ | 4.4 | 55.9 | 59.5 | 2122.9 | 65125.9 |
| Execution wall time | |||||
| Time units | ms | s | s | s | min:s |
| Intel Xeon E5-2697 v3 | |||||
| 1 core | 515 | 8.7 | 10.1 | 310 | 105:21 |
| 4 cores | 126 | 2.18 | 2.57 | 78 | 26:24 |
| 14 cores | 37 | 0.63 | 0.74 | 22 | 7:43 |
| NVIDIA Tesla K20 | 100 | 0.45 | 1.28 | 10.6 | 3:59 |
| NVIDIA Tesla K80 | 60 | 0.3 | 2.97 | 7.3 | 2:53 |
The CSD refcode in the case of QANQIG and the PDB ID in the other cases. QANQIG – 10 residue peptide (Aravinda et al., 2004 ▸); 3p4j – Z-DNA hexamer duplex d(CGCGCG) (2) (Brzezinski et al., 2011 ▸); 1ejg – crambin (Jelsch et al., 2000 ▸); 4q4g – peptidoglycan endopeptidase RipA (Squeglia et al., 2014 ▸); 1f8b – complex of native influenza virus neuraminidase (carbohydrate chains and solvent water molecules removed; Smith et al., 2001 ▸).
Structures were parametrized with the use of the UBDB bank (Jarzembska & Dominiak, 2012 ▸) and the LSDB program (Volkov et al., 2004 ▸) supported by manual interventions in the case of disordered parts.
The lists of reflection indices were generated with the help of cctbx (Grosse-Kunstleve et al., 2002 ▸).
Equal to No. of symmetry operations used in calculations times No. of reflections times No. of atoms (in millions).