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. 2018 Feb 22;16(2):e2003693. doi: 10.1371/journal.pbio.2003693

Table 1. Definitions of key terms used in this manuscript.

Key term Definition
Reproducibility The similarity of outcomes between replicate studies. This can be measured, e.g., by the CI95 of the mean effect size estimates of a sample of replicate studies (depicted by the shaded area in Fig 2A).
FNR False negative rate: proportion of true positives that yield negative test outcomes. FNR = false negative ÷ (true positive + false negative).
FPR False positive rate: proportion of true negatives that yield positive test outcomes. FPR = false positive ÷ (false positive + true negative).
DOR Diagnostic odds ratio: ratio of the odds of the test being positive in the case of a true positive relative to the odds of the test being positive in the case of a true negative. DOR = (true positive ÷ false positive) ÷ (false negative ÷ true negative).
pc Coverage probability: the probability with which the CI95 of an effect size estimate includes the true effect size.
psa The proportion of studies reporting both a significant effect for α = 0.05 and a CI95 for the effect size estimate that includes the true effect.
I2 I2 is a descriptive statistic of the ratio of excess dispersion to total dispersion.
I2 = (Q − df ÷ Q) × 100%, where Q is the weighted sum of squares of study effect sizes and df gives the degrees of freedom.

Abbreviations: CI95, 95% confidence interval; DOR, diagnostic odds ratio; FNR, false negative rate; FPR, false positive rate; pc, coverage probability.