. 2016 Jul 28;9(9):8311–8325. doi: 10.18632/oncotarget.10882

Table 2. Seven independent SNPs for model development in dataset3.

SNP	CHR	Nearest gene	Region	Location on Chromosome^a	Non-risk	Risk	Risk allele frequency		OR (95%CI)^b	P value^b
SNP	CHR	Nearest gene	Region	Location on Chromosome^a	Non-risk	Risk	Cases	Controls	OR (95%CI)^b	P value^b
rs2853677	5	TERT	Intron	1287194	T	C	0.449	0.375	1.36(1.20-1.55)	2.70E-06
rs2735948	5	TERT	Intergenic	1299213	C	T	0.170	0.146	1.20(1.01-1.42)	0.044
rs6589664	11	TMEM25	Exon	117910014	G	A	0.310	0.271	1.21(1.05-1.39)	6.80E-03
rs494560	11	PHLDB1	Intron	118026759	A	G	0.801	0.746	0.73(1.18-1.60)	4.04E-05
rs17748	11	PHLDB1	UTR-3	118033634	C	T	0.327	0.263	1.36(1.18-1.56)	1.57E-05
rs3761121	20	ZGPAT	Intron	62342695	A	G	0.269	0.202	1.45(1.25-1.69)	9.85E-07
rs1058319	20	SLC2A4RG	UTR-3	62374389	T	C	0.354	0.256	1.59(1.39-1.83)	4.76E-11

a, based on NCBI Build 36; b, ORs, 95%CI and P values were calculated from univariate logistic regression analysis based on additive model.