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. 2018 Feb 23;19:161. doi: 10.1186/s12864-018-4546-8

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© The Author(s). 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 5 — A comparison of the accuracy of different methods on real Hi-C datasets. a The Spearman Correlation Coefficient of 3DMax, 3DMax1, MOGEN, ChromSDE, ShRec3D, MCMC5C, and LorDG on the normalized contact maps of GM06990_HindIII cell. b The Pearson Correlation Coefficient of 3DMax, 3DMax1, MOGEN, ChromSDE, ShRec3D, MCMC5C, and LorDG on the normalized contact maps of GM06990_HindIII cell. c The Comparison of 3DMax, 3DMax1, ChromSDE and ShRec3D on the normalized contact maps of GM06990 HindIII and Ncol cell. Y-axis denotes either the distance Spearman correlation coefficient (dSCC) score in the range [− 1,1] or the distance Pearson correlation coefficient score (dPCC) in the range [− 1,1]. X-axis denotes the Chromosome number. A higher dSCC value means the better accuracy