TABLE 2.

Primers for amplification of integration and deletion sites

Primer	Sequence (5′ → 3′)	Target description
123728F	TCCAGCGCGGATTTAAAGTC	Chromosomal plasmid integration
124869R	CGCACCTTCTTGATGACCTTC
126112R	TAATCAATGCCACACCCAGTC
171002F	TCAAGACGACGCGTACTATCC
172513R	GCCGTCTCGACTTTATGATGC
109141F	CTTTTGCAATATTGCTGGCCGCAC	Plasmid-borne Tn4401e
96896R	GTGATCCCCTGGGCGAAATGCGCCTGGTAAGCA
106692F	GGCGGCGTTATCACTGTATT
105185F	GGCGAATGTGCGGGTCCACG
1884723F	TCCCTCGAGAGCCAGCGCAAG	Chromosomal O antigen
1886053R	TGCTGCTGCAGGACCAGGGG
1874656F	GGTTTGAACGGATGTGAG
1875938R	CGTCCAATCAGGGCAACAG