Table 2. List of polymorphic SNPs and genotypes frequencies in Saanen and French Alpine goat breeds.
| Genotype frequencies | |||||
|---|---|---|---|---|---|
| SNP | Allele substitution | Genotype | Saanen | French Alpine | Total population |
| rs666806435 | C>T | CC | 0.72 | 0.91 | 0.81 |
| CT | 0.24 | 0.09 | 0.17 | ||
| TT | 0.04 | 0 | 0.02 | ||
| N | 25 | 22 | 47 | ||
| rs669986850 | C>T | TT | 0.83 | 0.53 | 0.70 |
| TC | 0.17 | 0.47 | 0.30 | ||
| CC | 0 | 0 | 0 | ||
| N | 24 | 19 | 43 | ||
| rs671256096 | C>T | CC | 0.83 | 0.96 | 0.89 |
| CT | 0.17 | 0.04 | 0.11 | ||
| TT | 0 | 0 | 0 | ||
| N | 24 | 22 | 46 | ||
| rs671391101 | A>G | AA | 1.00 | 0.89 | 0.95 |
| GG | 0 | 0.11 | 0.05 | ||
| AG | 0 | 0 | 0 | ||
| N | 25 | 18 | 43 | ||
| rs660778229 | A>G | AA | 0 | 0.10 | 0.04 |
| GG | 0.76 | 0.66 | 0.72 | ||
| AG | 0.24 | 0.24 | 0.24 | ||
| N | 25 | 21 | 46 | ||
| rs635969404 | C>T | CC | 0.24 | 0.59 | 0.40 |
| TC | 0.44 | 0.32 | 0.38 | ||
| TT | 0.32 | 0.09 | 0.22 | ||
| N | 25 | 22 | 47 | ||
| rs640582069 | G>T | TG | 0.40 | 0.50 | 0.45 |
| GG | 0.52 | 0.37 | 0.45 | ||
| TT | 0.08 | 0.13 | 0.10 | ||
| N | 25 | 24 | 49 | ||
| rs665173888 | A>G | AA | 0 | 0.05 | 0.02 |
| GG | 0.80 | 0.69 | 0.75 | ||
| AG | 0.20 | 0.26 | 0.23 | ||
| N | 25 | 19 | 44 | ||
| rs664283580 | C>T | CC | 0.92 | 0.96 | 0.94 |
| TC | 0.08 | 0.04 | 0.06 | ||
| TT | 0 | 0 | 0 | ||
| N | 25 | 24 | 49 | ||
| rs671509714 | A>G | GG | 1.00 | 0.91 | 0.96 |
| AG | 0 | 0.09 | 0.04 | ||
| AA | 0 | 0 | 0 | ||
| N | 25 | 21 | 46 | ||
| rs635583012 | G>T | TG | 0.68 | 0.50 | 0.60 |
| GG | 0.16 | 0.18 | 0.17 | ||
| TT | 0.16 | 0.32 | 0.23 | ||
| N | 25 | 22 | 47 | ||
| rs661165283 | A>T | AA | 0.12 | 0 | 0.06 |
| AT | 0.40 | 0.25 | 0.33 | ||
| TT | 0.48 | 0.75 | 0.61 | ||
| N | 25 | 24 | 49 | ||
| rs669561078 | A>G | AA | 0.84 | 0.85 | 0.84 |
| AG | 0.16 | 0.15 | 0.16 | ||
| GG | 0 | 0 | 0 | ||
| N | 25 | 20 | 45 | ||
Notes.
- N
- number of studied animals