Table 2.
Variation in transcripts in N4 and R3 treatments.
| Gene family | Transcript ID | Tissue | Relative abundancea | ||
|---|---|---|---|---|---|
| ST | N4 | R3 | |||
| CNGC | CL252.Contig4 | Root | 2.12 ± 0.38 | 10.28 ± 1.75 | 7.49 ± 0.74 |
| Unigene22496 | Root | 10.10 ± 2.95 | 2.05 ± 1.08 | 1.23 ± 0.70 | |
| HKT1 | CL7722.Contig1 | Shoot | 17.58 ± 3.16 | 3.80 ± 1.28 | 4.70 ± 0.58 |
| CL7722.Contig1 | Root | 15.84 ± 2.39 | 0.00 ± 0.00 | 0.26 ± 0.18 | |
| CL7722.Contig2 | Root | 18.18 ± 2.80 | 1.20 ± 0.43 | 3.41 ± 0.78 | |
| H+-ATPases | CL10770.Contig2 | Shoot | 0.50 ± 0.11 | 44.21 ± 7.67 | 21.10 ± 4.62 |
| CL10770.Contig2 | Root | 2.38 ± 0.18 | 26.33 ± 0.99 | 4.83 ± 1.63 | |
| CL10770.Contig3 | Shoot | 1.13 ± 0.39 | 52.81 ± 5.33 | 24.17 ± 4.92 | |
| CL10770.Contig3 | Root | 4.17 ± 0.09 | 30.84 ± 4.17 | 4.88 ± 0.14 | |
| Unigene18580 | Shoot | 1.16 ± 0.91 | 40.44 ± 16.69 | 13.18 ± 3.47 | |
| Unigene18580 | Root | 2.18 ± 0.53 | 23.11 ± 3.07 | 3.68 ± 0.30 | |
| Unigene18581 | Shoot | 1.08 ± 0.08 | 74.08 ± 10.57 | 35.45 ± 5.84 | |
| Unigene18581 | Root | 2.82 ± 0.82 | 34.01 ± 2.74 | 6.09 ± 2.43 | |
| H+-pyrophosphatase | Unigene18887 | Root | 6.64 ± 3.38 | 11.18 ± 4.92 | 35.03 ± 4.15 |
| K+ transporter | Unigene9700 | Shoot | 0.00 ± 0.00 | 12.59 ± 7.04 | 1.38 ± 0.60 |
| Unigene9701 | Shoot | 0.21 ± 0.25 | 14.45 ± 8.62 | 1.37 ± 2.25 | |
| LEA protein | CL7543.Contig2 | Root | 0.25 ± 0.09 | 0.27 ± 0.07 | 7.69 ± 2.35 |
| CL5798.Contig2 | Root | 243.04 ± 44.4 | 121.55 ± 13.1 | 68.99 ± 12.39 | |
| Photosynthesis related | CL9069.contig2 | Shoot | 0.04 ± 0.05 | 0.25 ± 0.25 | 0.25 ± 0.15 |
| Unigene23265 | Shoot | 69.67 ± 8.87 | 24.34 ± 10.18 | 27.28 ± 9.27 | |
| Unigene21013 | Shoot | 119.87 ± 14.8 | 82.90 ± 4.83 | 83.39 ± 2.25 | |
| Unigene25029 | Shoot | 225.51 ± 0.96 | 120.40 ± 10.7 | 120.66 ± 12.2 | |
| Aquaporin | Unigene15239 | Shoot | 0.09 ± 0.06 | 34.26 ± 23.08 | 8.14 ± 1.29 |
| Unigene15239 | Root | 0.19 ± 0.08 | 4.93 ± 0.60 | 1.40 ± 0.76 | |
| Proline metabolic related | CL3925.contig3 | Shoot | 21.03 ± 0.38 | 275.92 ± 35.1 | 145.14 ± 11.3 |
| CL3925.contig3 | Root | 3.84 ± 0.58 | 62.23 ± 6.27 | 22.51 ± 1.94 | |
| CL3925.contig4 | Shoot | 1.49 ± 0.93 | 24.55 ± 7.27 | 7.72 ± 0.81 | |
| CL11007.contig3 | Shoot | 0.14 ± 0.17 | 13.79 ± 8.51 | 3.85 ± 4.71 | |
| CL11007.contig5 | Shoot | 7.44 ± 0.75 | 45.95 ± 12.53 | 27.70 ± 3.61 | |
| Unigene16871 | Shoot | 27.31 ± 0.57 | 136.09 ± 26.5 | 92.17 ± 7.30 | |
| Unigene16871 | Root | 27.94 ± 1.17 | 87.23 ± 18.37 | 72.84 ± 13.81 | |
| Unigene33006 | Root | 0.82 ± 0.37 | 6.60 ± 0.79 | 15.56 ± 4.01 | |
a
Relative abundance of transcripts was calculated from the RPKMs of three replicates in ST, N4, and R3 conditions, respectively.