Table 2:
Synthetic Hi-C community
| Name | Replicons | Accession | Chr abbr. | A | ncpy | %GC | nx | m |
|---|---|---|---|---|---|---|---|---|
| NC_007651 | Bt1 | 67.29 | 225 | 0.24 | ||||
| Burkholderia | 2 | 0.054 | 1 | |||||
| NC_007650 | Bt2 | 68.07 | 144 | 0.20 | ||||
| thailandensis E264 | ||||||||
| Escherichia coli BL21 | 1 | NC_012892 | BL21 | 0.242 | 1 | 50.83 | 508 | 0.46 |
| Escherichia coli K12 | 1 | NC_010473 | K12 | 0.166 | 1 | 50.78 | 568 | 0.50 |
| DH10B | ||||||||
| NC_008497 | Lb | 46.22 | 629 | 1.12 | ||||
| Lactobacillus brevis | 3 | NC_008498 | - | 0.436 | 1 | 38.64 | 3 | 0.92 |
| ATCC 367 | NC_008499 | - | 38.51 | 16 | 1.84 | |||
| Pediococcus pentosaceus | 1 | NC_008525 | Pp | 0.102 | 1 | 37.36 | 863 | 1.93 |
| ATCC 25745 |
A synthetic community used to demonstrate the utility of Hi-C sequencing data in resolving a microbial metagenome [15]. It is composed of 5 bacteria, including 2 closely related strains (E. coli K12 and BL21), a genome with 2 plasmids (L. brevis), and a 2-chromosome genome (B. thailandensis). A is relative abundance, ncpy is copy number, nx is number of restriction sites, and m = nx/n0 is match quality between chromosome and enzyme choice: m < 1 is worse, m > 1 is better.