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. 2017 Nov 15;7(2):1–12. doi: 10.1093/gigascience/gix103

Table 3:

Synthetic Meta3C community

Name Replicons Accession Chr abbr. A ncpy %GC nx m
Bacillus subtilis subsp. 1 NC_000964 Bs 0.123 1 43.51 14529 0.88
subtilis str. 168
Escherichia coli str. 1 NC_000913 K12 0.562 1 50.79 24311 1.34
K-12 substr. MG1655
NC_002505 Vc1 47.70 5909 0.51
Vibrio cholerae O1 2 0.332 1
NC_002506 Vc2 46.91 1802 0.43
biovar El Tor str.
N16961

A synthetic community used to demonstrate the utility of Meta3C sequencing data in resolving a microbial metagenome [17,41]. It is composed of 3 bacteria with 1 possessing 2 chromosomes. A is relative abundance, ncpy is copy number, nx is number of restriction sites, and m = nx/n0 is match quality between chromosome and enzyme choice: m < 1 is worse, m > 1 is better.