. 2018 Feb 26;92(6):e01631-17. doi: 10.1128/JVI.01631-17

TABLE 2.

Hydrogen bonds and van der Waals interactions between RMA9 peptide and FLA-E*n01801

Complex	Hydrogen bonds and salt bridges				van der Waals contact residues^a
	Peptide		Heavy chain
	Residue	Atom	Residue	Atom
	P1-Arg	N	Tyr¹⁷¹	OH	Leu⁵, Tyr⁷, Tyr⁵⁹, Arg⁶², Glu⁶³, Lys⁶⁶, Tyr¹⁵⁹, Thr¹⁶³, Trp¹⁶⁷, Tyr¹⁷¹ (93)
	P1-Arg	N	Tyr⁷	OH
		NH₂	Glu⁶³	OE2 (S)
		O	Tyr¹⁵⁹	OH
	P2-Met	N	Glu⁶³	OE1	Tyr⁷, Tyr⁹, Met⁴⁵, Glu⁶³, Lys⁶⁶, Val⁶⁷, Tyr⁹⁹, Tyr¹⁵⁹ (70)
		O	Lys⁶⁶	NZ
	P3-Ala	N	Tyr⁹⁹	OH	Tyr⁹, Lys⁶⁶, Tyr⁹⁹, Trpt¹⁵⁶, Tyr¹⁵⁹ (31)
	P4-Asn				Lys⁶⁶ (10)
	P5-Val				Asn⁶⁹, Thr⁷⁰, Ile⁷³ (17)
FLA-E*n01801	P6-Ser	Og	Arg⁹⁷	NH1	Ile⁷³, Arg⁹⁷, Glu¹⁵² (13)
			Arg⁹⁷	NH2
	P7-Thr	N	Glu¹⁵²	OE2	Ile⁷³, Lys¹⁴⁶, Trp¹⁴⁷, Ala¹⁵⁰, Glu¹⁵² (26)
			Glu¹⁵²	OE1
		Og₁	Arg¹⁵⁵	NH1
		O	Trp¹⁴⁷	NE1
	P8-Gly	O	Lys¹⁴⁶	NZ	Ile⁷³, Asp⁷⁷, Lys¹⁴⁶, Trp¹⁴⁷ (21)
			Trp¹⁴⁷	NE1
	P9-Arg	N	Asp⁷⁷	OD1	Asp⁷⁷, Thr⁸⁰, Leu⁸¹, Tyr⁸⁴, Ile⁹⁵, Gln⁹⁶, Asp¹¹⁶, Ser¹¹⁷, Tyr¹¹⁸, Tyr¹²³, Thr¹⁴³, Lys¹⁴⁶, Trp¹⁴⁷ (94)
		NH₁	Ser¹¹⁷	O
		NH₂	Ser¹¹⁷	O
			Asp¹¹⁶	OD2 (S)
		O	Tyr⁸⁴	OH

Numbers in parentheses are the amounts of van der Waals force.