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. 2017 Jun 7;75(6):ftx060. doi: 10.1093/femspd/ftx060

Figure 2.

Figure 2.

NGS and analysis pipelines. Most common tools used for the analysis of WGS data. QC checks*: quality control before de novo assembly: poorly identified bases, low quality sequences and/or contaminants such as adaptors. QC checks$: quality control checks after assembly for mixed samples and bacterial contamination.