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. 2018 Feb 27;18:17. doi: 10.1186/s12866-018-1160-5

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© The Author(s). 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 1 — Phylogenetic relationship of SDSE isolates associated with different clinical manifestations. Phylogenetic tree based on SNP-analysis of the 53 SDSE genomes. Clinical manifestation does not appear to be associated with particular phylogenetic clades. OAI, osteoarticular infection; NSTI, necrotizing soft-tissue infection; SSTI, skin and soft-tissue infection. Scale indicates substitutions per site. The phylogenetic tree was constructed in Geneious by global alignment with free end gaps using the Tamura-Nei genetic distance model [38]. FastTree was used for visualising and tree-rendering [39]