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. 2018 Feb 7;7:e31977. doi: 10.7554/eLife.31977

Table 2. T2D-associated variants with allelic imbalance in open chromatin.

Variant Locus DIAGRAM
P-value
Fgwas
 T2D PPA
Allelic imbalance
Allele Ratio (Allele #)
Allelic imbalance WASP P-value Direction of effect (T2D)
 rs11708067 ADCY5 8.8E-13 0.92 0.29
(38 A VS 94 G alleles)
1.2E-06 risk allele A closed
 rs11257655 CDC123 4.0E-08 0.95 0.39
(278 C VS 435 T alleles)
4.5E-09 risk allele T open
 rs10842991 KLHDC5 7.3E-07 0.13 0.64
(75 C VS 43 T alleles)
4.1E-03 risk C allele open