Table 2. T2D-associated variants with allelic imbalance in open chromatin.
| Variant | Locus | DIAGRAM P-value |
Fgwas T2D PPA |
Allelic imbalance Allele Ratio (Allele #) |
Allelic imbalance WASP P-value | Direction of effect (T2D) |
|---|---|---|---|---|---|---|
| rs11708067 | ADCY5 | 8.8E-13 | 0.92 | 0.29 (38 A VS 94 G alleles) |
1.2E-06 | risk allele A closed |
| rs11257655 | CDC123 | 4.0E-08 | 0.95 | 0.39 (278 C VS 435 T alleles) |
4.5E-09 | risk allele T open |
| rs10842991 | KLHDC5 | 7.3E-07 | 0.13 | 0.64 (75 C VS 43 T alleles) |
4.1E-03 | risk C allele open |