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. Author manuscript; available in PMC: 2019 Feb 15.
Published in final edited form as: FEBS Lett. 2018 Feb 15;592(4):586–598. doi: 10.1002/1873-3468.12994

Table 1.

The list of laforin sequences used in the present study.a

No. Taxonomy Organism GenBank UniProt Source Length Copy 1 Copy 2 Copy 3 DSP
1 Vertebrata Homo sapiens AAG18377.1 O95278 CAZy database 331 1–124 138–322
2 Vertebrata Gallus gallus AAR21595.1 Q5ZL46 BLAST-O95278 319 1–111 125–309
3 Vertebrata Tetraodon nigroviridis CAG03589.1 Q4S6Z3 BLAST-O95278 312 1–106 120–305
4 Vertebrata Alligator mississippiensis KYO37738.1 A0A151NLS3 BLAST-O95278 305 1–99 113–297
5 Vertebrata Xenopus laevis AAH73202.1 Q6GPD8 BLAST-O95278 313 1–106 120–304
6 Cephalochordata Branchiostoma floridae EEN49019.1 C3ZE63 BLAST-O95278 316 1–117 131–316
7 Cnidaria Exaiptasia pallida KXJ09946.1 --- BLAST-O95278 324 1–118 132–313
8 Cnidaria Nematostella vectensis EDO32135.1 A7SVW9 BLAST-O95278 324 1–118 132–313
9 Chromerida Vitrella brassicaformis CEL97703.1 A0A0G4ELK3 BLAST-O95278 358 1–139 152–337
10 Nematoda Trichinella britovi KRY46872.1 A0A0V1CCK1 BLAST-O95278 361 1–104 118–299
11 Nematoda Trichinella murrelli KRX36920.1 A0A0V0TD31 BLAST-O95278 360 1–104 118–299
12 Nematoda Trichinella papuae KRZ74431.1 A0A0V1MS55 BLAST-O95278 312 1–104 118299
13 Nematoda Trichinella pseudospiralis KRY67691.1 A0A0V1E1K1 BLAST-O95278 314 1–104 118–301
14 Nematoda Trichinella sp. T8 KRZ83465.1 A0A0V1NHG2 BLAST-O95278 361 1–104 118–299
15 Nematoda Trichinella spiralis EFV53640.1 E5SNJ4 BLAST-O95278 347 1–104 118–288
16 Rhodophyta Cyanidioschyzon merolae BAM83396.1 M1UXX5 Ref [47] 532 165–265 270–370 380–525
17 Rhodophyta Chondrus crispus CDF36183.1 R7QEI4 BLAST-M1UXX5 549 1–100 176–278 285–387 401–545
18 Cryptophyta Guillardia theta EKX31889.1 L1I7M6 BLAST-M1UXX5 611 97–182 209–294 317–421 455–607
19 Ciliophora Paramecium tetraurelia CAK57701.1 A0BGN4 Ref [47] 726 257–356 365–460 538–685
20 Ciliophora Tetrahymena thermophila EAR89845.2 Q22X01 Ref [47] 480 58–162 163–267 270–420
21 Ciliophora Oxytricha trifallax EJY86497.1 J9IW88 BLAST-M1UXX5 474 49–177 182–283 320–470
22 Ciliophora Stylonychia lemnae CDW83192.1 A0A078APE9 BLAST-M1UXX5 545 200–250 255–357 399–545
23 Apicomplexa Eimeria tenella CDJ40554.1 U6KW34 Ref. [47] 459 1–254 269–450
24 Apicomplexa Toxoplasma gondii EPT29986.1 S8F2K7 Ref. [47] 523 1–312 327–508
25 Apicomplexa Eimeria acervulina CDI81398.1 U6GQ52 BLAST-U6KW34 1435 856–1108 1115–1233
26 Apicomplexa Eimeria brunetti CDJ47235.1 U6LHG3 BLAST-S8F2K7 1418 965–1218 1233–1414
27 Apicomplexa Eimeria maxima CDJ57191.1 U6LZL6 BLAST-S8F2K7 1392 924–1177 1206–1387
28 Apicomplexa Eimeria mitis CDJ36110.1 U6KDK1 BLAST-S8F2K7 740 288–541 556–737
29 Apicomplexa Eimeria necatrix CDJ62429.1 U6MIY3 BLAST-S8F2K7 459 1–254 269–450
30 Apicomplexa Eimeria praecox CDI86477.1 U6H3K9 BLAST-S8F2K7 1365 913–1165 1180–1361
31 Apicomplexa Hammondia hammondi KEP61982.1 A0A074TJ74 BLAST-S8F2K7 523 1–312 327–508
32 Apicomplexa Neospora caninum CBZ52253.1 F0VEV9 BLAST-S8F2K7 524 1–312 327–508
a

Table contains sequences of both experimentally characterized and putative laforin orthologues from several groups: (i) representatives of vertebrates (mammals, birds, fishes, reptiles and amphibians; all in green); (ii) non-vertebrates represented by phyla Cephalochordata (walnut), Cnidaria (cyan), Chromerida (orange) and Nematoda (magenta); (iii) red and cryptomonad algae (blue); and (iv) protozoans represented by phyla Ciliophora (gold) and Apicomplexa (red). GenBank [51] and UniProt [52] are the accession numbers of sequences from the two databases (if available). Source indicates the way how the sequence was found; BLAST followed by a UniProt accession number means that a sequence was found in the BLAST search using the UniProt’s sequence as a query. Length is the number of amino acid residues in the protein. The three columns with “copies” show the boundaries of CBM20 that may be present in more copies within a single laforin’s sequence. The last column “DSP” indicates the boundaries of the catalytic DSP domain.