Table 1.
The list of laforin sequences used in the present study.a
| No. | Taxonomy | Organism | GenBank | UniProt | Source | Length | Copy 1 | Copy 2 | Copy 3 | DSP |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Vertebrata | Homo sapiens | AAG18377.1 | O95278 | CAZy database | 331 | 1–124 | 138–322 | ||
| 2 | Vertebrata | Gallus gallus | AAR21595.1 | Q5ZL46 | BLAST-O95278 | 319 | 1–111 | 125–309 | ||
| 3 | Vertebrata | Tetraodon nigroviridis | CAG03589.1 | Q4S6Z3 | BLAST-O95278 | 312 | 1–106 | 120–305 | ||
| 4 | Vertebrata | Alligator mississippiensis | KYO37738.1 | A0A151NLS3 | BLAST-O95278 | 305 | 1–99 | 113–297 | ||
| 5 | Vertebrata | Xenopus laevis | AAH73202.1 | Q6GPD8 | BLAST-O95278 | 313 | 1–106 | 120–304 | ||
| 6 | Cephalochordata | Branchiostoma floridae | EEN49019.1 | C3ZE63 | BLAST-O95278 | 316 | 1–117 | 131–316 | ||
| 7 | Cnidaria | Exaiptasia pallida | KXJ09946.1 | --- | BLAST-O95278 | 324 | 1–118 | 132–313 | ||
| 8 | Cnidaria | Nematostella vectensis | EDO32135.1 | A7SVW9 | BLAST-O95278 | 324 | 1–118 | 132–313 | ||
| 9 | Chromerida | Vitrella brassicaformis | CEL97703.1 | A0A0G4ELK3 | BLAST-O95278 | 358 | 1–139 | 152–337 | ||
| 10 | Nematoda | Trichinella britovi | KRY46872.1 | A0A0V1CCK1 | BLAST-O95278 | 361 | 1–104 | 118–299 | ||
| 11 | Nematoda | Trichinella murrelli | KRX36920.1 | A0A0V0TD31 | BLAST-O95278 | 360 | 1–104 | 118–299 | ||
| 12 | Nematoda | Trichinella papuae | KRZ74431.1 | A0A0V1MS55 | BLAST-O95278 | 312 | 1–104 | 118299 | ||
| 13 | Nematoda | Trichinella pseudospiralis | KRY67691.1 | A0A0V1E1K1 | BLAST-O95278 | 314 | 1–104 | 118–301 | ||
| 14 | Nematoda | Trichinella sp. T8 | KRZ83465.1 | A0A0V1NHG2 | BLAST-O95278 | 361 | 1–104 | 118–299 | ||
| 15 | Nematoda | Trichinella spiralis | EFV53640.1 | E5SNJ4 | BLAST-O95278 | 347 | 1–104 | 118–288 | ||
| 16 | Rhodophyta | Cyanidioschyzon merolae | BAM83396.1 | M1UXX5 | Ref [47] | 532 | 165–265 | 270–370 | 380–525 | |
| 17 | Rhodophyta | Chondrus crispus | CDF36183.1 | R7QEI4 | BLAST-M1UXX5 | 549 | 1–100 | 176–278 | 285–387 | 401–545 |
| 18 | Cryptophyta | Guillardia theta | EKX31889.1 | L1I7M6 | BLAST-M1UXX5 | 611 | 97–182 | 209–294 | 317–421 | 455–607 |
| 19 | Ciliophora | Paramecium tetraurelia | CAK57701.1 | A0BGN4 | Ref [47] | 726 | 257–356 | 365–460 | 538–685 | |
| 20 | Ciliophora | Tetrahymena thermophila | EAR89845.2 | Q22X01 | Ref [47] | 480 | 58–162 | 163–267 | 270–420 | |
| 21 | Ciliophora | Oxytricha trifallax | EJY86497.1 | J9IW88 | BLAST-M1UXX5 | 474 | 49–177 | 182–283 | 320–470 | |
| 22 | Ciliophora | Stylonychia lemnae | CDW83192.1 | A0A078APE9 | BLAST-M1UXX5 | 545 | 200–250 | 255–357 | 399–545 | |
| 23 | Apicomplexa | Eimeria tenella | CDJ40554.1 | U6KW34 | Ref. [47] | 459 | 1–254 | 269–450 | ||
| 24 | Apicomplexa | Toxoplasma gondii | EPT29986.1 | S8F2K7 | Ref. [47] | 523 | 1–312 | 327–508 | ||
| 25 | Apicomplexa | Eimeria acervulina | CDI81398.1 | U6GQ52 | BLAST-U6KW34 | 1435 | 856–1108 | 1115–1233 | ||
| 26 | Apicomplexa | Eimeria brunetti | CDJ47235.1 | U6LHG3 | BLAST-S8F2K7 | 1418 | 965–1218 | 1233–1414 | ||
| 27 | Apicomplexa | Eimeria maxima | CDJ57191.1 | U6LZL6 | BLAST-S8F2K7 | 1392 | 924–1177 | 1206–1387 | ||
| 28 | Apicomplexa | Eimeria mitis | CDJ36110.1 | U6KDK1 | BLAST-S8F2K7 | 740 | 288–541 | 556–737 | ||
| 29 | Apicomplexa | Eimeria necatrix | CDJ62429.1 | U6MIY3 | BLAST-S8F2K7 | 459 | 1–254 | 269–450 | ||
| 30 | Apicomplexa | Eimeria praecox | CDI86477.1 | U6H3K9 | BLAST-S8F2K7 | 1365 | 913–1165 | 1180–1361 | ||
| 31 | Apicomplexa | Hammondia hammondi | KEP61982.1 | A0A074TJ74 | BLAST-S8F2K7 | 523 | 1–312 | 327–508 | ||
| 32 | Apicomplexa | Neospora caninum | CBZ52253.1 | F0VEV9 | BLAST-S8F2K7 | 524 | 1–312 | 327–508 |
Table contains sequences of both experimentally characterized and putative laforin orthologues from several groups: (i) representatives of vertebrates (mammals, birds, fishes, reptiles and amphibians; all in green); (ii) non-vertebrates represented by phyla Cephalochordata (walnut), Cnidaria (cyan), Chromerida (orange) and Nematoda (magenta); (iii) red and cryptomonad algae (blue); and (iv) protozoans represented by phyla Ciliophora (gold) and Apicomplexa (red). GenBank [51] and UniProt [52] are the accession numbers of sequences from the two databases (if available). Source indicates the way how the sequence was found; BLAST followed by a UniProt accession number means that a sequence was found in the BLAST search using the UniProt’s sequence as a query. Length is the number of amino acid residues in the protein. The three columns with “copies” show the boundaries of CBM20 that may be present in more copies within a single laforin’s sequence. The last column “DSP” indicates the boundaries of the catalytic DSP domain.