Table 2.
Genome properties and features of S211 strain.
| Total | Number | |
|---|---|---|
| DNA, total number of bases | 5,948,515 | 100.00% |
| DNA coding number of bases | 5,285,067 | 88.85% |
| DNA G+C number of bases | 3,594,697 | 60.43% |
| DNA scaffolds | 1 | 100.00% |
| Genes total number | 5,521 | 100.00% |
| Protein coding genes | 5,306 | 96.11% |
| RNA genes | 215 | 3.89% |
| rRNA genes | 9 | 0.16% |
| 5S rRNA | 6 | 0.11% |
| 16S rRNA | 2 | 0.04% |
| 23S rRNA | 1 | 0.02% |
| tRNA genes | 57 | 1.03% |
| Other RNA genes | 149 | 2.70% |
| Protein coding genes with function prediction | 4,441 | 80.44% |
| Protein coding genes without function prediction | 865 | 15.67% |
| Protein coding genes with enzymes | 1,371 | 24.83% |
| Protein coding genes w/o enzymes but with candidate KO based enzymes | 5 | 0.09% |
| Protein coding genes connected to KEGG pathways | 1,610 | 29.16% |
| Protein coding genes not connected to KEGG pathways | 3,696 | 66.94% |
| Protein coding genes connected to KEGG Orthology (KO) | 2,927 | 53.02% |
| Protein coding genes not connected to KEGG Orthology (KO) | 2,379 | 43.09% |
| Protein coding genes connected to MetaCyc pathways | 1,162 | 21.05% |
| Protein coding genes not connected to MetaCyc pathways | 4,144 | 75.06% |
| Protein coding genes with COGs | 3,954 | 71.62% |
| Protein coding genes with KOGs | 1,031 | 18.67% |
| Protein coding genes with Pfam | 4,613 | 83.55% |
| Protein coding genes with TIGRfam | 1,762 | 31.91% |
| Protein coding genes with InterPro | 2,959 | 53.60% |
| Protein coding genes with IMG Terms | 1,467 | 26.57% |
| Protein coding genes with IMG Pathways | 455 | 8.24% |
| Protein coding genes with IMG Parts List | 599 | 10.85% |
| Protein coding genes in internal clusters | 1,497 | 27.11% |
| Protein coding genes in Chromosomal Cassette | 5,457 | 98.84% |
| Chromosomal Cassettes | 444 | – |
| Biosynthetic Clusters | 8 | – |
| Genes in Biosynthetic Clusters | 205 | 3.71% |
| Fused Protein coding genes | 724 | 13.11% |
| Protein coding genes coding signal peptides | 559 | 10.12% |
| Protein coding genes coding transmembrane proteins | 1,224 | 22.17% |
| COG clusters | 2,067 | 52.28% |
| KOG clusters | 562 | 14.21% |
| Pfam clusters | 2,603 | 56.43% |
| TIGRfam clusters | 1,390 | 78.89% |