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. 2018 Feb 27;2018:bay007. doi: 10.1093/database/bay007

Table 1.

Updated curation data model at SGD

Data type Description Value
Regulator Gene identifier Gene name or systematic name
Regulator typea Controlled vocabulary Transcription factor
Chromatin modifier
Protein modifier
Target Gene identifier Gene name or systematic name
Direction Controlled vocabulary Positive
Negative
null
Regulation ofb Controlled vocabulary Transcription
Protein activity
Happens during Controlled vocabulary: Situation under which the regulation occurs Defined subset of GO terms: descendent terms of Biological Process ‘cellular response to stimulus’ GO: 0051716 and ‘cell cycle phase’ GO: 0022403
Annotation method Controlled vocabulary Manually curated
High-throughput
Evidence Type of experiment used to test for and/or demonstrate the regulatory relationship ECO term
Strain background Controlled vocabulary Strain name
Reference Publication in which the regulatory relationship is described PubMed ID
a

Future expansion to include RNA-binding proteins and RNA modifiers.

b

Future expansion to include RNA stability and protein stability.