Table 1.
Data type | Description | Value |
---|---|---|
Regulator | Gene identifier | Gene name or systematic name |
Regulator typea | Controlled vocabulary | Transcription factor |
Chromatin modifier | ||
Protein modifier | ||
Target | Gene identifier | Gene name or systematic name |
Direction | Controlled vocabulary | Positive |
Negative | ||
null | ||
Regulation ofb | Controlled vocabulary | Transcription |
Protein activity | ||
Happens during | Controlled vocabulary: Situation under which the regulation occurs | Defined subset of GO terms: descendent terms of Biological Process ‘cellular response to stimulus’ GO: 0051716 and ‘cell cycle phase’ GO: 0022403 |
Annotation method | Controlled vocabulary | Manually curated |
High-throughput | ||
Evidence | Type of experiment used to test for and/or demonstrate the regulatory relationship | ECO term |
Strain background | Controlled vocabulary | Strain name |
Reference | Publication in which the regulatory relationship is described | PubMed ID |
Future expansion to include RNA-binding proteins and RNA modifiers.
Future expansion to include RNA stability and protein stability.