Table 2. RMSD and INF scores for the double-stranded structures and pseudoknot predictions.
| Structure | RMSD (Å) | INF | INFwc | INFnc | INFbph |
|---|---|---|---|---|---|
| 157D | 1.6 | 0.98 | 1 | 1 | - |
| 157D(χpc) | 1.5 | 0.98 | 1 | 1 | - |
| 1DQH | 2.3 | 0.93 | 1 | - | - |
| 1DQH(χpc) | 2.1 | 0.93 | 0.94 | - | - |
| 1KD5 | 4.4(3.6) | 0.81 | 1 | 0 | -(0) |
| 1KD5(χpc) | 3.6 | 0.89 | 1 | 0 | - |
| 1SA9 | 2 | 0.92 | 1 | 0 | - |
| 1SA9(χpc) | 2 | 0.92 | 1 | 0 | - |
| 205D | 1.4 | 0.93 | 1 | 1 | - |
| 205D(χpc) | 1.6 | 0.95 | 1 | 1 | - |
| 402D | 3.3(1.4) | 0.89 | 1 | 0(1) | - |
| 402D(χpc) | 1.4 | 0.89 | 1 | 1 | - |
| 1I9X | 4.2 | 0.85 | 0.83 | - | - |
| 1I9X(χpc) | 4.5 | 0.85 | 0.83 | - | - |
| 1L2X | 4 | 0.84 | 0.94 | 0.42 | 0 |
| 1L2X(χpc) | 4.4 | 0.81 | 0.94 | 0.22 | 0 |
The values correspond to the scores of the minimum energy conformation found on each case. In parentheses are the values of structures that were found with an energy practically indistinguishable to the minimum.