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. 2018 Feb 22;25(Pt 2):451–467. doi: 10.1107/S1600577517018148

Table 2. Refinement and validation statistics for the glucose isomerase models refined against structure factor amplitudes merged across all temperatures and at separate temperatures.

The RMSD values between models refined against data sets acquired at different temperatures and the deposited model refined against the temperature-averaged data set serve as confirmation of the isomorphism between different crystals. FOM values provide confirmation that the phase error is minimal.

  Multi-temperature glucose isomerase models Averaged model
Temperature (K) 15 40 80 100 130 All merged together
 
Refinement
Resolution range (Å) 50.01–1.70 50.01–1.70 50.01–1.70 50.01–1.70 50.05–1.70 50.01–1.70
No. of unique reflections (test set) 46918 (2433) 48550 (2530) 48458 (2530) 47448 (2475) 48591 (2531) 48877 (2547)
Mean B-factor (Å2) 10.52 10.59 10.43 13.69 10.49 11.04
R work/R free (%) 12.79/15.39 12.77/15.10 12.83/15.30 12.64/15.20 13.02/15.71 12.60/15.07
FOM 0.9283 0.9319 0.9264 0.9333 0.9177 0.9315
R.m.s deviations
 Bond lengths (Å) 0.009 0.009 0.009 0.009 0.009 0.009
 Bond angle (°) 1.403 1.402 1.407 1.397 1.416 1.401
Estimated overall coordinate error based on R-free value (Å) 0.077 0.073 0.074 0.075 0.076 0.073
Estimated overall coordinate error based on maximum likelihood (Å) 0.040 0.040 0.040 0.039 0.041 0.039
 
Validation
Molprobity score 1.48 1.51 1.49 1.50 1.50 1.51
Molprobity clashscore 5.16 5.31 5.00 4.85 5.47 5.31
Ramachandran outliers (%) 0.3 0.3 0.3 0.3 0.3 0.3
Ramachandran favoured (%) 96.9 96.6 96.6 96.4 96.9 96.6
 
Non-isomorphism assessment
RMSD against the averaged model (Å)  
 All atoms 0.036 0.035 0.040 0.061 0.038 N/A
 Protein atoms 0.029 0.029 0.036 0.043 0.033 N/A