Table 2. Refinement and validation statistics for the glucose isomerase models refined against structure factor amplitudes merged across all temperatures and at separate temperatures.
The RMSD values between models refined against data sets acquired at different temperatures and the deposited model refined against the temperature-averaged data set serve as confirmation of the isomorphism between different crystals. FOM values provide confirmation that the phase error is minimal.
| Multi-temperature glucose isomerase models | Averaged model | |||||
|---|---|---|---|---|---|---|
| Temperature (K) | 15 | 40 | 80 | 100 | 130 | All merged together |
| Refinement | ||||||
| Resolution range (Å) | 50.01–1.70 | 50.01–1.70 | 50.01–1.70 | 50.01–1.70 | 50.05–1.70 | 50.01–1.70 |
| No. of unique reflections (test set) | 46918 (2433) | 48550 (2530) | 48458 (2530) | 47448 (2475) | 48591 (2531) | 48877 (2547) |
| Mean B-factor (Å2) | 10.52 | 10.59 | 10.43 | 13.69 | 10.49 | 11.04 |
| R work/R free (%) | 12.79/15.39 | 12.77/15.10 | 12.83/15.30 | 12.64/15.20 | 13.02/15.71 | 12.60/15.07 |
| FOM | 0.9283 | 0.9319 | 0.9264 | 0.9333 | 0.9177 | 0.9315 |
| R.m.s deviations | ||||||
| Bond lengths (Å) | 0.009 | 0.009 | 0.009 | 0.009 | 0.009 | 0.009 |
| Bond angle (°) | 1.403 | 1.402 | 1.407 | 1.397 | 1.416 | 1.401 |
| Estimated overall coordinate error based on R-free value (Å) | 0.077 | 0.073 | 0.074 | 0.075 | 0.076 | 0.073 |
| Estimated overall coordinate error based on maximum likelihood (Å) | 0.040 | 0.040 | 0.040 | 0.039 | 0.041 | 0.039 |
| Validation | ||||||
| Molprobity score | 1.48 | 1.51 | 1.49 | 1.50 | 1.50 | 1.51 |
| Molprobity clashscore | 5.16 | 5.31 | 5.00 | 4.85 | 5.47 | 5.31 |
| Ramachandran outliers (%) | 0.3 | 0.3 | 0.3 | 0.3 | 0.3 | 0.3 |
| Ramachandran favoured (%) | 96.9 | 96.6 | 96.6 | 96.4 | 96.9 | 96.6 |
| Non-isomorphism assessment | ||||||
| RMSD against the averaged model (Å) | ||||||
| All atoms | 0.036 | 0.035 | 0.040 | 0.061 | 0.038 | N/A |
| Protein atoms | 0.029 | 0.029 | 0.036 | 0.043 | 0.033 | N/A |