Table 1.

Genes associated with selective sweeps in domestic animals reported in other studies

Chr	Start	End	Avg rnk FST and π	π	F ST	Closest genes	Distance to closest gene	Function
13	50310001	50650000	2	3.56	0.53	PANK2	0	Neurodegeneration
3	124790001	125080000	21.5	2.80	0.35	KITLG	27570	Coat colour
2	184990001	185040000	42.5	1.98	0.33	GLI2	139099	Growth
1	199640001	199790000	51	1.79	0.35	IGF2BP2	0	Adiposity
4	78890001	79000000	51.5	2.44	0.31	GLI3	29289	Pigmentation
17	59450001	59520000	62.5	2.32	0.30	TBX3	215541	Pigmentation
9	36140001	36240000	63	1.72	0.34	PLAG1	0	Fertility, stature
15	21900001	22010000	70.5	1.60	0.39	BCO2	0	Yellow-fat
9	13570001	13610000	82.5	1.85	0.30	DGAT1	0	Milk fat
6	37420001	37510000	144	1.56	0.29	LCORL	0	Weight/height
3	124640001	124680000	184	1.69	0.26	KITLG	0	Coat colour
8	75670001	75700000	228.5	1.97	0.24	ESR1	0	Litter size; prolifacy
6	38500001	38530000	245.5	1.62	0.25	LCORL	1047670	Weight/height
5	19460001	19480000	312.5	1.23	0.27	IRF1	5040	Immune function
3	129730001	129750000	359	0.94	0.31	SOCS2	7494	Weight and milk production
1	100990001	101010000	383.5	1.26	0.24	TCHH	0	Hair
4	78800001	78820000	386.5	1.15	0.26	GLI3	209289	Pigmentation
5	85880001	85900000	405	1.11	0.26	MEF2C	173852	Skeletal muscle development
2	105830001	105850000	417.5	1.27	0.23	HAND2	235173	Limb development
20	17530001	17550000	434.5	1.207	0.24	VEGFA	147890	Reproduction
13	63380001	63400000	469	1.237	0.22	ITCH	0	Coat colour
1	203460001	203480000	481	0.977	0.25	SOX2	52282	Stem cell maintenance
6	35290001	35310000	486.5	1.05	0.24	GPRIN3	201294	Brain development
6	70290001	70310000	492.5	1.24	0.21	KIT	55390	Coat colour