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. Author manuscript; available in PMC: 2019 Mar 2.
Published in final edited form as: Virus Res. 2018 Jan 31;247:26–33. doi: 10.1016/j.virusres.2018.01.010

Table 1.

Sequences of siRNA and real time qRT-PCR primers and probe for PDI1, PDIA3, PDIA4 and Grp78 used in this study.

siRNA Target Sequences (duplex of synthetic RNA)
PDI1 rGrArU rCrUrC rArGrA rArCrC rUrUrC rUrGrC rCrUrU rCrArG rCrUrU*
rArGrC rUrUrC rUrCrU rGrCrC rArGrC rUrGrU rGrUrA rCrUrC rCrCrU
rCrCrA rUrCrC rUrUrG rCrUrC rArGrC rUrGrG rUrArU rUrUrG rGrArG
PDIA3 rArUrC rCrUrC rArArU rGrGrC rArUrC rUrUrC rUrUrU rArUrU rGrGrA *
rUrGrA rGrArG rGrArA rCrUrG rArGrG rCrUrG rGrUrC rCrUrG rCrCrU
rUrGrU rGrArA rGrGrA rCrGrA rArArC rArArG rGrUrG rArUrA rCrCrC
PDIA4 rCrUrC rCrUrC rUrUrC rCrUrC rGrUrC rGrUrC rGrUrC rCrUrC rCrUrC *
rCrArA rUrArA rArGrA rArGrA rUrGrC rCrArU rUrGrA rGrGrArU
rGrGrA rGrGrA rCrGrA rCrGrA rCrGrA rGrGrA rArGrA rGrGrArG
Grp78 rUrArG rUrGrA rGrArA rCrCrA rUrGrG rCrArG rArArA rUrUrU rCrUrU *
rArCrU rCrArA rUrUrU rCrArA rUrUrC rUrUrG rCrUrU rGrArU rGrCrU
rCrArA rGrUrG rUrUrC rCrArG rArUrC rUrCrG rGrUrU rUrCrC rGrUrC
Real time qRT-PCR Target Sequences (5′ to 3′ DNA)
PDI1 FWD-TCA AGG GCA AGA TCC TGT TTA T
REV-CGG GCA CTC CTC TTT CTT TAG
Probe-/56-FAM/TT CAT CGA C/Zen/A GCG ACC ACA CTG AC/3IABkFQ/
PDIA3 FWD-GCC AGC AAC TTG AGG GAT AA
REV-GGA AGG ACG AAA CAA GGT GAT A
Probe-/56-FAM/CC GGT TTG C/Zen/A CAC ACC AAT GTT GA/3IABkFQ
PDIA4 FWD-CTA ACA GCC TGA GAG AGG ATT AC
REV-CGT AGC TCT TGG GCT CAT ATT
Probe-/56-FAM/TG CAG CCT G/Zen/A GAA ATT CCA GTC CA/3IABkFQ/
Grp78 FWD-GTT CTT GTT GGT GGC TCT ACT
REV-ACA GCC TCA TCT GGG TTT ATG
Probe-/56-FAM/TT TAA TGG C/Zen/A AGG AGC CAT CCC GT/3IABkFQ
β-actin FWD-GGCATCCACGAAACTACCTT
REV-AGCACTGTGTTGGCGTACAG
Probe-/HEX-ATCATGAAGTGTGACGTGGACATCCG-TAMRA
*

The listed siRNAs were confirmed to reduce both virus replication and target mRNA.