Table 2.
Predicted lincRNAs in maize, libraries treated with Herbaspirillum seropedicae.
| Library | id 9 (Control) | id 10 | id 11 (Control) | id 12 |
|---|---|---|---|---|
| Raw input | 7,158,821 | 5,032,782 | 8,277,629 | 6,327,933 |
| Mapped Reads | 4,528,477 | 3,161,660 | 8,321,623 | 3,662,784 |
| Consensus sequences | 156,565 | 155,472 | 157,562 | 155,578 |
| Non-coding transcripts ≥ 200 bp | 2988 | 2731 | 3168 | 2792 |
| Intergenic non-coding transcripts ≥ 200 bp | 2776 | 2536 | 2938 | 2592 |
| lincRNAs predicted by SVM | 2743 | 2512 | 2904 | 2567 |
| lincRNAs annotated by BLAST | 513 | 420 | 543 | 446 |
| lincRNAs annotated by BLAST and predicted by SVM | 507 | 418 | 539 | 444 |