Table 4.
Available database for RNA biomarkers for cancer.
| Name | Biomarker Type | Dysfunction Type | Website |
|---|---|---|---|
| HMDD v2.0 | miRNA | miRNA expression level, miRNA gene copy number alteration, miRNA mutation, miRNA binding site altertaion, genetic varation in miRNA binding-site | http://cmbi.bjmu.edu.cn/hmdd |
| Osteosarcoma Database | miRNA | miRNA expression level | http://osteosarcoma-db.uni-muenster.de |
| CoReCG | RNA and DNA | gene expression level, gene mutation, gene polymorphism | lms.snu.edu.in/corecg |
| BC-BET | RNA | gene expression level | http://bioinformatics.easternct.edu/BCBET2/ |
| Database of disease-related biomarkers | RNA | gene expression level | http://ibi.imim.es/biomarkers/ |
| MIRUMIR | miRNA | miRNA expression level | http://www.bioprofiling.de/MIRUMIR |
| BMDB | RNA, DNA, and protein | gene encoding protein assotiated with disease, gene copy number alteration, alternative splicing etc. | https://edrn.nci.nih.gov/biomarkers |
| exRNA Atlas | exRNA * | small RNA sequencing and RT-qPCR-derived exRNA profiles | http://exrna-atlas.org/ |
| miRandola | exRNA | expression level | http://mirandola.iit.cnr.it/ |
| ExoCarta | exosomal proteins, RNA and lipids | expression level | http://www.exocarta.org/ |
* A database of the Extracellular RNA Communication Consortium (ERCC) including the small RNA sequencing and RT-qPCR-derived exRNA profiles.