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. 2018 Mar 1;13(3):e0193682. doi: 10.1371/journal.pone.0193682

Fig 4. Alignment of the 5´-terminal sequences of the PEDV genomes.

Fig 4

From nt 34 of the AF353511 reference sequence the different sequences align well but the reference sequence contains an insertion of one nt (nt 72) and a duplication of 4nt (see nt 82–89) that are absent in each of the other sequences. Due to the sequencing strategies used not all the sequences are complete. The Br1/87 (DTU) terminal sequence is extensively rearranged (see text for details) and contains a region (in black italics) that is the “reverse complement” of part of the reference sequence (boxed italics). Two single nt changes were found in the APHA sequence, marked in bold type, one change was shared with the ANSES sequence. The TRS-L is also indicated. The > symbol indicates that additional sequence is present (but not shown here) at the 5´ terminus in the DTU sequence.