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. Author manuscript; available in PMC: 2018 Jun 20.
Published in final edited form as: Biochemistry. 2017 Jun 12;56(24):2985–2994. doi: 10.1021/acs.biochem.6b01192

Table 3.

Deprotonation free energies (kcal/mol), pKas and pKa shifts (in pKa units) of G12 in HHR from different sets of TI simulations and experiments.

Model ΔGDEPR pKa pKa shift
Guanine (ref.) −114.1 ± 0.5 9.2
HHR:G12 −108.9 ± 0.3 12.9 ± 0.2 3.7 ± 0.2
HHR · Mg2+:G12 −115.8 ± 0.5 8.0 ± 0.4 −1.2 ± 0.4
Experiments(15) 8.0 −1.2