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. Author manuscript; available in PMC: 2019 Feb 28.
Published in final edited form as: Cell Syst. 2018 Jan 17;6(2):180–191.e4. doi: 10.1016/j.cels.2017.12.007

Figure 5. Large-scale validation with mass spectrometry data confirmed Scikit-ribo’s accurate TE estimates, especially for low-abundance genes.

Figure 5

(A) Scikit-ribo derived protein abundance (PA) for all genes in the validation set (r = 0.81, β = 0.83). (B) Scikit-ribo derived PA for genes with TPM less than 100 (r = 0.6, β = 0.48). (C) RPKM-derived PA for all genes in the validation set (r = 0.77, β = 0.75). (D) RPKM-derived PA for genes with TPM less than 100 (r = 0.35, β = 0.29). The black dashed line denotes the identity line; y=x.