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. 2017 Aug 7;39:143–174. doi: 10.3767/persoonia.2017.39.07

Table 1.

Details of isolates from Nothophytophthora and related genera considered in the phylogenetic, morphological and growth-temperature studies. GenBank numbers for sequences obtained in the present study are printed in italics.

Species
 Isolate numbersa
 Origin
 GenBank accession numbers
International collections Local collections Host; source Location; year Collector; reference ITS LSU Btub HSP90 Cox1 NADH1
N. amphigynosabcd CBS 142348 BD268 Stream baiting; atlantic forest Portugal; 2015 T. Jung; this study KY788382 KY788428 KY788515 KY788555 KY788473 KY788596
N. amphigynosabcd – BD269 Stream baiting; atlantic forest Portugal; 2015 T. Jung; this study KY788383 KY788431 KY788516 KY788556 KY788474 KY788597
N. amphigynosabcd CBS 142349 BD741 Stream baiting; atlantic forest Portugal; 2015 T. Jung; this study KY788384 KY788432 KY788517 KY788557 KY788475 KY788598
N. amphigynosabcd – BD742 Stream baiting; atlantic forest Portugal; 2015 T. Jung; this study KY788385 KY788434 KY788518 KY788558 KY788476 KY788599
N. amphigynosabc – BD857 Stream baiting; atlantic forest Portugal; 2015 T. Jung; this study KY788386 KY788429 KY788519 KY788559 KY788477 KY788600
N. amphigynosabc – BD858 Stream baiting; atlantic forest Portugal; 2015 T. Jung; this study KY788387 KY788430 KY788520 KY788560 KY788478 KY788601
N. amphigynosabc – BD859 Stream baiting; atlantic forest Portugal; 2015 T. Jung; this study KY788388 KY788435 KY788521 KY788561 KY788479 KY788602
N. amphigynosabc – BD860 Stream baiting; atlantic forest Portugal; 2015 T. Jung; this study KY788389 KY788433 KY788522 KY788562 KY788480 KY788603
N. caducabcd CBS 142350 CL328 Stream baiting; Valdivian rainforest Chile; 2014 T. Jung; this study KY788401 KY788470 KY788531 KY788571 KY788489 KY788612
N. caducacd – CL235b Stream baiting; Valdivian rainforest Chile; 2014 T. Jung; this study KY788390 KY788459 – – – –
N. caducabc – CL239 Stream baiting; Valdivian rainforest Chile; 2014 T. Jung; this study KY788391 KY788460 KY788523 KY788563 KY788481 KY788604
N. caducabc – CL240 Stream baiting; Valdivian rainforest Chile; 2014 T. Jung; this study KY788392 KY788461 KY788524 KY788564 KY788482 KY788605
N. caducabcd – CL320 Stream baiting; Valdivian rainforest Chile; 2014 T. Jung; this study KY788393 KY788462 KY788525 KY788565 KY788483 KY788606
N. caducabcd – CL321 Stream baiting; Valdivian rainforest Chile; 2014 T. Jung; this study KY788394 KY788463 KY788526 KY788566 KY788484 KY788607
N. caducabcd – CL322 Stream baiting; Valdivian rainforest Chile; 2014 T. Jung; this study KY788395 KY788464 – – – –
N. caducabcd – CL323 Stream baiting; Valdivian rainforest Chile; 2014 T. Jung; this study KY788396 KY788465 KY788527 KY788567 KY788485 KY788608
N. caducabcd – CL324 Stream baiting; Valdivian rainforest Chile; 2014 T. Jung; this study KY788397 KY788466 – – – –
N. caducabcd – CL325 Stream baiting; Valdivian rainforest Chile; 2014 T. Jung; this study KY788398 KY788467 KY788528 KY788568 KY788486 KY788609
N. caducabcd – CL326 Stream baiting; Valdivian rainforest Chile; 2014 T. Jung; this study KY788399 KY788468 KY788529 KY788569 KY788487 KY788610
N. caducabcd – CL327 Stream baiting; Valdivian rainforest Chile; 2014 T. Jung; this study KY788400 KY788469 KY788530 KY788570 KY788488 KY788611
N. caducabc CBS 142351 CL333 Stream baiting; Valdivian rainforest Chile; 2014 T. Jung; this study KY788402 KY788471 KY788532 KY788572 KY788490 KY788613
N. caducabc – CL334 Stream baiting; Valdivian rainforest Chile; 2014 T. Jung; this study KY788403 KY788472 KY788533 KY788573 KY788491 KY788614
N. chlamydosporabcd CBS 142353 CL316 Stream baiting; Valdivian rainforest Chile; 2014 T. Jung; this study KY788405 KY788450 KY788535 KY788575 KY788493 KY788616
N. chlamydosporabc CBS 142352 CL195 Stream baiting; Valdivian rainforest Chile; 2014 T. Jung; this study KY788404 KY788449 KY788534 KY788574 KY788492 KY788615
N. chlamydosporabcd – CL317 Stream baiting; Valdivian rainforest Chile; 2014 T. Jung; this study KY788406 KY788451 KY788536 KY788576 KY788494 KY788617
N. chlamydosporabcd – CL318 Stream baiting; Valdivian rainforest Chile; 2014 T. Jung; this study KY788407 KY788452 KY788537 KY788577 KY788495 KY788618
N. chlamydosporabcd – CL319 Stream baiting; Valdivian rainforest Chile; 2014 T. Jung; this study KY788408 KY788453 KY788538 KY788578 KY788496 KY788619
N. intricatabcd CBS 142354 RK113-1s Aesculus hippocastanum Germany; 2011 T. Jung; this study KY788413 KY788440 KY788543 KY788583 KY788501 KY788624
N. intricatac – RK113-1sa A. hippocastanum Germany; 2011 T. Jung; this study – – – – – –
N. intricatabcd – RK113-1sb A. hippocastanum Germany; 2011 T. Jung; this study KY788409 KY788436 KY788539 KY788579 KY788497 KY788620
N. intricatabcd CBS 142355 RK113-1sH A. hippocastanum Germany; 2011 T. Jung; this study KY788412 KY788439 KY788542 KY788582 KY788500 KY788623
N. intricatabcd – RK113-1sHa A. hippocastanum Germany; 2011 T. Jung; this study KY788410 KY788437 KY788540 KY788580 KY788498 KY788621
N. intricatabcd – RK113-1sHb A. hippocastanum Germany; 2011 T. Jung; this study KY788411 KY788438 KY788541 KY788581 KY788499 KY788622
N. valdivianabcd CBS 142357 CL331 Stream baiting; Valdivian rainforest Chile; 2014 T. Jung; this study KY788417 KY788457 KY788547 KY788587 KY788505 KY788628
N. valdivianabc CBS 142356 CL242 Stream baiting; Valdivian rainforest Chile; 2014 T. Jung; this study KY788414 KY788454 KY788544 KY788584 KY788502 KY788625
N. valdivianabcd – CL329 Stream baiting; Valdivian rainforest Chile; 2014 T. Jung; this study KY788415 KY788455 KY788545 KY788585 KY788503 KY788626
N. valdivianabcd – CL330 Stream baiting; Valdivian rainforest Chile; 2014 T. Jung; this study KY788416 KY788456 KY788546 KY788586 KY788504 KY788627
N. valdivianabcd – CL332 Stream baiting; Valdivian rainforest Chile; 2014 T. Jung; this study KY788418 KY788458 KY788548 KY788588 KY788506 KY788629
N. vietnamensisbcd CBS 142358 VN794 Castanopsis sp. & Acer campbellii Vietnam; 2016 T. Jung; this study KY788420 KY788442 KY788550 KY788590 KY788508 KY788631
N. vietnamensisbcd – VN230 Castanopsis sp. & Acer campbellii Vietnam; 2016 T. Jung; this study KY788419 KY788441 KY788549 KY788589 KY788507 KY788630
N. vietnamensisbcd CBS 142359 VN795 Castanopsis sp. & Acer campbellii Vietnam; 2016 T. Jung; this study KY788421 KY788443 KY788551 KY788591 KY788509 KY788632
N. vietnamensiscd – VN796 Castanopsis sp. & Acer campbellii Vietnam; 2016 T. Jung; this study KY788422 KY788444 – – – –
N. vietnamensiscd – VN797 Castanopsis sp. & Acer campbellii Vietnam; 2016 T. Jung; this study KY788423 KY788445 – – – –
N. vietnamensiscd – VN798 Castanopsis sp. & Acer campbellii Vietnam; 2016 T. Jung; this study KY788424 KY788446 – – – –
N. vietnamensisbcd – VN799 Castanopsis sp. & Acer campbellii Vietnam; 2016 T. Jung; this study KY788425 KY788447 KY788552 KY788592 KY788510 KY788633
N. vietnamensisbcd – VN800 Castanopsis sp. & Acer campbellii Vietnam; 2016 T. Jung; this study KY788426 KY788448 KY788553 KY788593 KY788511 KY788634
Nothophytophthora sp.be – REB326-69 Stream baiting New Zealand; 2008 –; Than et al. 2013 JX122744 – – – – –
Nothophytophthora sp.bf – PR12-475 Stream baiting Ireland; 2014 –; O’Hanlon et al. 2016 KT633937 – – – – –
Nothophytophthora sp.bg – PR13-109 Stream baiting Ireland; 2015 –; O’Hanlon et al. 2016 KT633938 – – – – –
Aphanomyces euteichesb CBS 156.73
IMI 170485 – Pisum sativum Norway; – L. Sundheim; Robideau et al. 2011 HQ643117 HQ665132 – – HQ708190 –
Elongisporangium anandrumb CBS 285.31 – Rheum rhaponticum – C. Drechsler; Robideau et al. 2011 HQ643435 HQ665185 – – HQ708482 –
E. undulatumb CBS 157.69
IMI 323158 – Soil under Pinus sp. Alabama; 1968 W.A. Campbell; Robideau et al. 2011 HQ643946 HQ665134 – – HQ708987 –
Halophytophthora avicenniaeb CBS 188.85
ATCC 64709 DAR 50187 Avicennia marina Australia; – S. Wilkens; Robideau et al. 2011 HQ643147 HQ665146 – – HQ708219 –
H. batemanensisb CBS 679.84
IMI 327602 DAR 41559 Soil-covered leaf of Avicennia sp. Australia; 1982 J. Simpson; Robideau et al. 2011 HQ643148 HQ665286 – – HQ708220 –
H. epistomiab CBS 590.85
ATCC 28293
IMI 330183 – Decaying leaf Florida; – I.M. Master & J.W. Fell; Robideau et al. 2011 HQ643220 HQ665279 – – HQ708285 –
H. exoproliferab CBS 252.93
ATCC 76607 IFO 32420 Fallen leaf of Bruguiera gymnorrhyza Japan (Okinawa island); 1988 –; Robideau et al. 2011 HQ643132 HQ665174 – – HQ708205 –
H. operculatab CBS 241.83
ATCC 44952 – Decaying leaf of Avicennia marina Australia, – –; De Cock et al. 2015 KJ128038 KJ128038 – – KF853238 –
H. polymorphicab CBS 680.84 DAR 41562 Eucalyptus sp. Australia; 1982 J. Simpson; Robideau et al. 2011, De Cock et al. 2015 HQ643313 HQ665288 – – HQ708363 –
Hyaloperonospora sisymbrii-sophiaeb HV276 – Descurainia sophia Austria; 2000 H. Voglmayr; Voglmayr 2003 AY198253 EU054910 – – HM033186 –
Peronospora rumicisb HV312 – Rumex acetosa Austria; 2000 H. Voglmayr; Voglmayr 2003 AY198287 KC495032 – – KC494952 –
Phytophthora asparagib WPC P10690
ICMP 9495 – Asparagus officinalis New Zealand; 1986 P.G. Falloon; Robideau et al. 2011 HQ261683 EU080569 – – HQ261430 –
P. boehmeriaeb CBS 291.29
IMI 180614 – Boehmeria nivea Japan; – K. Sawada; Robideau et al. 2011 HQ643149 HQ665190 EU080162 EU080165 HQ708221 AY563992
P. cactorumb WPC P0714 – Syringa vulgaris The Netherlands; 1930 W.L. White; Robideau et al. 2011 HQ261514 EU080282 – – HQ261261 –
P. captiosab WPC P10719
ICMP 15576 – Eucalyptus saligna New Zealand; 1992 M.A. Dick & C.W. Barr; Robideau et al. 2011 HQ261522 EU079663 – – HQ261269 –
P. castaneaeb CBS 587.85
ATCC 36818
IMI 325914 – Soil Taiwan; – H.S. Chang; Robideau et al. 2011 HQ643255 HQ665278 – – HQ708315 –
P. colocasiaeb WPC P6317 – Colocasia esculenta Indonesia; 1989 M.D. Coffey; Robideau et al. 2011 HQ261539 EU079911 – – HQ261286 –
P. foliorumb WPC P10969 1307997-MI Rhododendron sp. California; 2005 C. Blomquist; Robideau et al. 2011 HQ261561 EU079684 – – HQ261308 –
P. heveaeb CBS 296.29
IMI 180616 – Hevea brasiliensis Malaysia; 1929 A. Thompson; Robideau et al. 2011 HQ643238 HQ665194 – – HQ708301 –
P. humicolab CBS 200.81
ATCC 52179 – Soil under Citrus sp. Taiwan; – P.J. Ann & W.H. Ko; Robideau et al. 2011 HQ643243 HQ665148 AY564069 EU080172 HQ708305 AY564011
P. ilicisb WPC P3939
ATCC 56615 – Ilex sp. British Columbia, Canada; 1988 H. Ho; Robideau et al. 2011 HQ261583 EU079864 – – HQ261330 –
P. infestansb CBS 366.51 – Solanum tuberosum The Netherlands; – –; Robideau et al. 2011 HQ643247 HQ665217 – – HQ708309 –
P. kernoviaeb WPC P10681
ICMP 14761 – Annona cherimola New Zealand; 2002 C.F. Hill; Robideau et al. 2011 HQ261603 EU079650 – – HQ261350 –
P. litchiib CBS 100.81 – Litchi chinensis Taiwan; – C.W. Kao; Voglmayr 2003 AY198308 AF235949 – – HQ708323 –
P. megakaryab WPC P8516 – Theobroma cacao Sao Tome and Principe; – –; Robideau et al. 2011 HQ261609 EU079974 – – HQ261356 –
P. niederhauseriib WPC P10616 – Hedera helix North Carolina, USA; 2001 G. Abad; Robideau et al. 2011 HQ261702 EU080233 – – HQ261449 –
P. polonicab WPC P15005 – Soil under Alnus glutinosa Poland; – T. Oszako; Robideau et al. 2011 HQ261646 EU080261 – – HQ261393 –
P. quercinab WPC P10334
CBS 782.95 – Soil and root of decaying Germany; 1995 T. Jung; Robideau et al. 2011 HQ261659 EU080494 – – HQ261406 –
Quercus robur
P. rubib CBS 967.95
ATCC 90442
IMI 355974 – Rubus idaeus Scotland; 1985 J.M. Duncan & D.M. Kennedy; Robideau et al. 2011 HQ643340 HQ665306 KU899234 KU899391 HQ708388 KU899476
Phytopythium borealeb CBS 551.88 – Soil under Brassica caulorapa China; – Y. Yang-nian; Robideau et al. 2011 HQ643372 HQ665261 – – HQ708419 –
Ph. helicoidesb CBS 286.31 – Phaseolus vulgaris USA; – C. Drechsler; Robideau et al. 2011 HQ643383 HQ665186 – – HQ708430 –
Ph. oedochilumb CBS 292.37 – – USA; – C. Drechsler; Robideau et al. 2011 HQ643392 HQ665191 – – HQ708439 –
Ph. ostracodesb CBS 768.73 – Clay soil Spain (Ibiza); 1972 A.J. van der Plaats-Niterink; Robideau et al. 2011 HQ643395 HQ665295 – – HQ708442 –
Pythium attrantheridiumb – DAOM 230383 Daucus carota Canada; – N. Allain-Boulé; Robideau et al. 2011 HQ643477 HQ665308 – – HQ708524 –
Py. caudatumbh CBS 584.85
ATCC 58383 – Xiphinema rivesi Pennsylvania, USA; 1984 B.A. Jaffee; Robideau et al. 2011 HQ643136 HQ665277 – – HQ708209 –
Py. insidiosumb CBS 574.85
ATCC 58643 – Horse Costa Rica; – –; Robideau et al. 2011 HQ643570 HQ665273 – – HQ708614 –
Py. oligandrumb CBS 382.34 – Matthiola sp. UK; – n.a.; Robideau et al. 2011 HQ643715 HQ665223 – – HQ708759 –
Py. rostratumb CBS 533.74 DAOM 229266 Soil The Netherlands; 1971 A.J. van der Plaats-Niterink; Robideau et al. 2011 HQ643767 HQ665252 – – HQ708808 –
Py. ultimum var. ultimumb CBS 122650 – Soil France; 2012 T. Rintoul; Robideau et al. 2011 HQ643864 HQ665103 – – HQ708905 –
Py. vanterpooliib CBS 295.37 – Triticum aestivum UK; 1936 T.C. Vanterpool; Robideau et al. 2011 HQ643952 HQ665193 – – HQ708993 –
Salisapilia tartareab CBS 208.95 IFO 32606 Submerged decaying leaf of Florida, USA; 1991 S.Y. Newell; Robideau et al. 2011 HQ643135 HQ232464 – – HQ708208 –
Spartina alterniflora

– = not available; authentic strains, ex-types, isotypes, neotypes and paratypes are printed in bolditalics-type.

a Abbreviations of isolates and culture collections: ATCC = American Type Culture Collection, Manassas, USA; CBS = CBS collection at the Westerdijk Fungal Biodiversity Institute (previously Centraalbureau voor Schimmelcultures), Utrecht, Netherlands; DAOM = Canadian National Mycological Herbarium, Agriculture and Agri-Food Canada, Ottawa, Canada; DAR = New South Wales Plant Pathology Herbarium, Orange Agricultural Institute, Orange, Australia; ICMP = International Collection of Micro-organisms from Plants, Auckland, New Zealand; IFO = Institute for Fermentation, Osaka, Japan; WPC = World Phytophthora Collection, University of California Riverside, USA; other isolate names and numbers are as given by the collectors and on GenBank, respectively.

b Isolates used in the phylogenetic studies.

c Isolates used in the morphological studies.

d Isolates used in the temperature-growth studies.

e Submitted to GenBank as Phytophthora sp. REB326-69.

f Submitted to GenBank as Phytophthora sp. PR12-475.

g Submitted to GenBank as Phytophthora sp. PR13-109.

h Submitted to GenBank as Lagenidium caudatum.