Table 1.
Species | Phylogenetic clade | # Genes | CEGMA completeness | Average gene length | Assembly Length (bp) | # Scaffolds | N50 | GC content % | Contig Length | |||
---|---|---|---|---|---|---|---|---|---|---|---|---|
# | Length | Mean | Median | Max Length | ||||||||
Trichinella spiralis | I | 16,380 | 95.6% | 952.8 | 63,525,422 | 6863 | 4 | 6,373,445 | 33.9 | 9256 | 1071 | 12,041,450 |
Trichuris muris | I | 11,004 | 96.1% | 1245.7 | 84,674,602 | 1683 | 59 | 400,602 | 44.8 | 50,312 | 1914 | 1,774,400 |
Trichuris trichiura | I | 8813 | 96.1% | 1293.9 | 75,496,503 | 4156 | 265 | 70,602 | 42.2 | 18,166 | 3965 | 533,758 |
Ascaris suum | III | 15,260 | 98.9% | 1188.5 | 265,545,801 | 31,538 | 260 | 290,558 | 37.8 | 8420 | 226 | 1,465,500 |
Brugia malayi | III | 18,074 | 97.4% | 1012.2 | 94,136,243 | 9827 | 62 | 191,089 | 29.6 | 9579 | 1340 | 5,235,760 |
Dirofilaria immitis | III | 12,857 | 98.0% | 1134.2 | 88,309,529 | 16,061 | 219 | 71,281 | 28 | 5498 | 754 | 1,085,577 |
Loa loa | III | 15,445 | 97.8% | 987.8 | 91,373,458 | 5773 | 130 | 174,388 | 31 | 15,828 | 1186 | 1,325,655 |
Globodera pallida | IV | 16,403 | 83.8% | 1079.6 | 124,672,549 | 6873 | 298 | 121,687 | 36.7 | 18,139 | 1699 | 600,076 |
Meloidogyne hapla | IV | 14,420 | 97.2% | 1044.7 | 53,017,507 | 3452 | 372 | 37,608 | 27.4 | 15,358 | 5814 | 360,446 |
Caenorhabditis elegans | V | 30,697 | 100.0% | 1229.5 | 100,286,401 | 7 | 3 | 17,493,829 | 35.4 | 14,326,629 | 15,279,421 | 20,924,180 |
Haemonchus contortus | V | 24,466 | 95.0% | 1124.8 | 369,846,877 | 23,860 | 1151 | 83,287 | 43.1 | 15,501 | 1515 | 947,606 |
Necator americanus | V | 19,153 | 97.2% | 804.6 | 244,075,060 | 11,864 | 284 | 211,861 | 40.2 | 20,573 | 1315 | 1,890,151 |
Pristionchus pacificus | V | 24,217 | 98.0% | 994.3 | 172,494,865 | 18,083 | 39 | 1,244,534 | 42.8 | 9539 | 685 | 5,268,024 |
AC-Orig | V | 16,155 | 98.9% | 894.3 | 348,994,891 | 8098 | 263 | 373,206 | 43.5 | 43,096 | 1515 | 2,174,208 |
AC-PB | V | 17,540 | 962.8 |