Table 3.

Illumina and Pacbio RNA-Seq read coverage over predicted gene sets

Read Type	Gene Set	Subset of genes	Total count	# of expressed genes (breadth ≥50%)	% expressed	Average read depth
						Any	Expressed
Illumina Reads	AC-Orig	All genes	16,026	10,405	64.9%	161.1	245.6
		Overlapping AC-PB genes	15,808	10,254	64.9%	160.9	245.5
		Not overlapping AC-PB genes	218	151	69.3%	171.3	246.4
	AC-PB	All genes	17,540	11,721	66.8%	156.3	231.6
		Overlapping AC-Orig genes	15,931	10,365	65.1%	158.3	240.8
		Not overlapping AC-Orig genes	1609	1356	84.3%	136.5	161.1
	Schwarz et al., [31]		36,687	16,376	44.6%	90.4	199.4
PacBio Reads	AC-Orig	All genes	16,026	3166	19.8%	3.3	8.9
		Overlapping AC-PB genes	15,808	3128	19.8%	3.2	8.8
		Not overlapping AC-PB genes	218	38	17.4%	4.1	12.8
	AC-PB	All genes	17,540	4209	24.0%	3.6	8.8
		Overlapping AC-Orig genes	15,931	3398	21.3%	3.4	8.7
		Not overlapping AC-Orig genes	1609	811	50.4%	6.4	9.1
	Schwarz et al., [31]		36,687	4903	13.4%	2.1	8.8