Table 2.
Fragment | Primer | Sequence(5ʹ–3ʹ) | Target | Position |
---|---|---|---|---|
Universal primers (Simon et al. 2006) | ||||
F1 | TK-J3790 | CATTAgATgACTgAAAgCAAgTA | tRNA Lys | 3,703–3,725 |
F1 | A6-N4552 | ATgTCCWgCAATYATATTWgC | ATP6 | 4,481–4,501 |
F2 | C3-J4792 | gTTgATTATAgACCWTgRCC | COIII | 4,695–4,715 |
F2 | C3-N5460 | TCAACAAAATgTCARTAYCA | COIII | 5,389–5,408 |
F3 | N5-J7572 | AAAgggAATTTgAgCTCTTTTWgT | ND5 | 7,395–7,418 |
F3 | N4-N8727 | AAATCTTTRATTgCTTATTCWTC | ND4 | 8,570–8,592 |
F4 | CB-J10933 | gTTCTACCTTgAggNCAAATRTC | Cytb | 10,728–10,750 |
F4 | CB-N11526 | TTCTACTggTCgRgCTCCAATYCA | Cytb | 11,343–11,363 |
Species specific primers (This study) | ||||
F5 | Dp2-F | gAATgACTACAAAAACTTCCACCTgC | COI | 2,887–2,912 |
F5 | Dp3-R | TTAAggggTgATATTTgTgggATT | ATP8 | 3,845–3,868 |
F6 | Dp4-F | AACCCTTgCTTTACCCTTATgATT | ATP6 | 4,303–4,326 |
F6 | Dp5-R | ATTgAAAAACCTAATAGTAATAAA | COIII | 4,794–4,817 |
F7 | Dp6-F | CCTCgTTCTTTgTggCAACTggAT | COIII | 5,255–5,278 |
F7 | Dp7-R | TTAgggTTggTTTCTTATTgTTTggT | ND5 | 7,618–7,643 |
F8 | Dp8-F | TAAACCAgAATAATAAgAACCAT | ND5 | 8,170–8,192 |
F8 | Dp9-R | gCATTATCAACggCgAATCCTCC | Cytb | 10,830–10,852 |
F9 | Dp10-F | AATCCTATTTTgATCgTTggTAg | Cytb | 11,300–11,322 |
F9 | Dp11-R | AACTTTTTTTTCATTTTTACACTT | 16SrRNA | 12,875–12,898 |
F10 | Dp12-F | TTCTCATCCAACCATTCATTCCAg | 16SrRNA | 13,071–13,094 |
F10 | Dp13-R | AAAAggggAgATgggTTACAAT | 12SrRNA | 14,133–14,158 |
F11 | Dp14-F | TTCAgAATAATAgggTATCTAATCC | 12SrRNA | 14,380–14,404 |
F11 | Dp1-R | TCCTCTTTCTTgTCTgATAATgTggg | COI | 2,174–2,199 |
F12 | Dp15-F | ggAggTggAgATCCTATTCTAT | COI | 2,080–2,101 |
F12 | Dp16-R | ggACgCTCTATCTTggAgTAAT | COII | 3,039–3,060 |
F13 | Dp17-F | AATCCTATTTTgATCgTTggTAg | Cytb | 11,300–11,322 |
F13 | Dp18-R | TATATATTTTTgTTTATgggggTA | 16SrRNA | 13,264–1,3287 |
F14 | Dp19-F | TgTTACgACTTATTTCACCTTggg | 12SrRNA | 13,986–14,009 |
F14 | Dp20-R | gTTTgTgCCAgCAGTTgCggTTA | 12SrRNA | 145,49–14,571 |
For amplification and sequencing of the A+T-rich region | ||||
Dp21-F | TAAAAAGAAGATCAAAATCCCAG | AT-rich | 14,977–14,999 | |
Dp23-R | CTATAAgTTATTAAAAACTAAT | AT-rich | 15,566–15,587 | |
Dp24-F | ATTAgTTTTTAAAAACTTATAg | AT-rich | 15,566–15,587 | |
Dp22-R | TTgATACTTTAggAggTggTTT | tRNA Gln | 85–106 | |
N = [A, C, G, T]; R = [A, G]; Y = [C, T]; W = [A, T] |