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. 2018 Mar 2;18(2):21. doi: 10.1093/jisesa/iey012

Table 2.

Primers used for PCR amplification

Fragment Primer Sequence(5ʹ–3ʹ) Target Position
Universal primers (Simon et al. 2006)
 F1 TK-J3790 CATTAgATgACTgAAAgCAAgTA tRNA Lys 3,703–3,725
 F1 A6-N4552 ATgTCCWgCAATYATATTWgC ATP6 4,481–4,501
 F2 C3-J4792 gTTgATTATAgACCWTgRCC COIII 4,695–4,715
 F2 C3-N5460 TCAACAAAATgTCARTAYCA COIII 5,389–5,408
 F3 N5-J7572 AAAgggAATTTgAgCTCTTTTWgT ND5 7,395–7,418
 F3 N4-N8727 AAATCTTTRATTgCTTATTCWTC ND4 8,570–8,592
 F4 CB-J10933 gTTCTACCTTgAggNCAAATRTC Cytb 10,728–10,750
 F4 CB-N11526 TTCTACTggTCgRgCTCCAATYCA Cytb 11,343–11,363
Species specific primers (This study)
 F5 Dp2-F gAATgACTACAAAAACTTCCACCTgC COI 2,887–2,912
 F5 Dp3-R TTAAggggTgATATTTgTgggATT ATP8 3,845–3,868
 F6 Dp4-F AACCCTTgCTTTACCCTTATgATT ATP6 4,303–4,326
 F6 Dp5-R ATTgAAAAACCTAATAGTAATAAA COIII 4,794–4,817
 F7 Dp6-F CCTCgTTCTTTgTggCAACTggAT COIII 5,255–5,278
 F7 Dp7-R TTAgggTTggTTTCTTATTgTTTggT ND5 7,618–7,643
 F8 Dp8-F TAAACCAgAATAATAAgAACCAT ND5 8,170–8,192
 F8 Dp9-R gCATTATCAACggCgAATCCTCC Cytb 10,830–10,852
 F9 Dp10-F AATCCTATTTTgATCgTTggTAg Cytb 11,300–11,322
 F9 Dp11-R AACTTTTTTTTCATTTTTACACTT 16SrRNA 12,875–12,898
 F10 Dp12-F TTCTCATCCAACCATTCATTCCAg 16SrRNA 13,071–13,094
 F10 Dp13-R AAAAggggAgATgggTTACAAT 12SrRNA 14,133–14,158
 F11 Dp14-F TTCAgAATAATAgggTATCTAATCC 12SrRNA 14,380–14,404
 F11 Dp1-R TCCTCTTTCTTgTCTgATAATgTggg COI 2,174–2,199
 F12 Dp15-F ggAggTggAgATCCTATTCTAT COI 2,080–2,101
 F12 Dp16-R ggACgCTCTATCTTggAgTAAT COII 3,039–3,060
 F13 Dp17-F AATCCTATTTTgATCgTTggTAg Cytb 11,300–11,322
 F13 Dp18-R TATATATTTTTgTTTATgggggTA 16SrRNA 13,264–1,3287
 F14 Dp19-F TgTTACgACTTATTTCACCTTggg 12SrRNA 13,986–14,009
 F14 Dp20-R gTTTgTgCCAgCAGTTgCggTTA 12SrRNA 145,49–14,571
For amplification and sequencing of the A+T-rich region
Dp21-F TAAAAAGAAGATCAAAATCCCAG AT-rich 14,977–14,999
Dp23-R CTATAAgTTATTAAAAACTAAT AT-rich 15,566–15,587
Dp24-F ATTAgTTTTTAAAAACTTATAg AT-rich 15,566–15,587
Dp22-R TTgATACTTTAggAggTggTTT tRNA Gln 85–106
N = [A, C, G, T]; R = [A, G]; Y = [C, T]; W = [A, T]