Table 2. Identified host-cell proteins with spectral counts at least 2-fold higher in NP pull down samples than eGFP samples.
| Description | Gene Symbol | Accession | Spectral count | Fold change | |||||
|---|---|---|---|---|---|---|---|---|---|
| NP | eGFP | ||||||||
| Exp. 1 | Exp. 2 | Ave. | Exp. 1 | Exp. 2 | Ave. | NP/EGFP | |||
| Tubulin alpha-1B chain | TUBA1B | P68363 | 169 | 51 | 110 | 6 | 27 | 16.5 | 6.666666667 |
| Tubulin alpha-1C chain | TUBA1C | Q9BQE3 | 166 | 50 | 108 | 6 | 27 | 16.5 | 6.545454545 |
| Nuclear fragile X mental retardation-interacting protein 2 | NUFIP2 | Q7Z417 | 358 | 40 | 199 | 21 | 51 | 36 | 5.527777778 |
| Tubulin beta chain | TUBB | P07437 | 122 | 26 | 74 | 3 | 39 | 21 | 3.523809524 |
| Filamin-A | FLNA | P21333 | 216 | 82 | 149 | 7 | 81 | 44 | 3.386363636 |
| Guanine nucleotide-binding protein subunit beta-2-like 1 | GNB2L1 | P63244 | 80 | 8 | 44 | 3 | 24 | 13.5 | 3.259259259 |
| Tubulin beta-4B chain | TUBB4B | P68371 | 110 | 24 | 67 | 7 | 36 | 21.5 | 3.11627907 |
| Ataxin-2-like protein | ATXN2L | Q8WWM7 | 367 | 191 | 279 | 38 | 155 | 96.5 | 2.89119171 |
| 40S ribosomal protein S18 | RPS18 | P62269 | 76 | 41 | 58.5 | 13 | 28 | 20.5 | 2.853658537 |
| Heat shock cognate 71 kDa protein | HSPA8 | P11142 | 275 | 89 | 182 | 37 | 109 | 73 | 2.493150685 |
| YTH domain-containing family protein 3 | YTHDF3 | Q7Z739 | 8 | 16 | 12 | 7 | 3 | 5 | 2.4 |
| Heat shock-related 70 kDa protein 2 | HSPA2 | P54652 | 110 | 67 | 88.5 | 32 | 44 | 38 | 2.328947368 |
| Pre-mRNA-processing factor 40 homolog A | PRPF40A | O75400 | 43 | 8 | 25.5 | 5 | 17 | 11 | 2.318181818 |
| Stress-70 protein, mitochondrial | HSPA9 | P38646 | 369 | 117 | 243 | 61 | 174 | 117.5 | 2.068085106 |
| Protein SET | SET | Q01105 | 17 | 16 | 16.5 | 11 | 5 | 8 | 2.0625 |
| Nuclease-sensitive element-binding protein 1 | YBX1 | P67809 | 54 | 11 | 32.5 | 28 | 4 | 16 | 2.03125 |
| Transitional endoplasmic reticulum ATPase | VCP | P55072 | 31 | 11 | 21 | 4 | 17 | 10.5 | 2 |