Table 1.
FDR > 5% | FDR < 5% | ||||
---|---|---|---|---|---|
up | up FC2 | down | down FC2 | ||
BWE vs. LB pH 7.0 | 1111 | 2298 | 999 | 2139 | 743 |
(18.0%) | (13.4%) | ||||
BWE vs. LB pH 9.0 | 1360 | 2126 | 864 | 2062 | 557 |
(15.6%) | (10.0%) | ||||
LB pH 9.0 vs. pH 7.0 | 2300 | 1677 | 232 | 1571 | 297 |
(4.2%) | (5.4%) |
Significant differentially expressed genes with false discovery rate (FDR) smaller than 5% and number of genes, which have a fold change (FC) 2 threshold. Both differentially up-regulated (up) and down-regulated (down) genes are indicated in the Table. The RNA-Seq analysis was performed on the full P. aeruginosa transcriptome (5548 transcripts) available.