Table 1:
Library technology | Raw data | Trimmed data* | ||||
---|---|---|---|---|---|---|
Reads insert size | Pairs | Number of reads | Number of bases | Number of reads | Number of bases | |
Illumina Nextera | Paired-end – 180 bp | R1 | 209 542 721 | 21 060 365 702 | 209 036 571 | 21 001 101 404 |
R2 | 209 542 721 | 21 049 308 698 | 209 036 571 | 20 991 650 008 | ||
Paired-end – 500 bp | R1 | 153 948 902 | 15 472 966 961 | 153 482 290 | 15 423 123 500 | |
R2 | 153 948 902 | 15 462 883 157 | 153 482 290 | 15 414 813 589 | ||
Mate-paired 3 – 12 Kb | R1 | 178 392 944 | 18 017 687 344 | 58 157 933 | 5 822 572 152 | |
R2 | 178 392 944 | 18 017 687 344 | 58 157 933 | 5 811 310 412 | ||
Pacific Biosciences | P4C – 10/SMTRC | Subreads | 1 663 730 | 11 171 487 485 |
*Trimmomatic parameters for Illumina reads—ILLUMINACLIP: NexteraPE-PE.fa:2:30:10 SLIDINGWINDOW:4:2 LEADING:10 TRAILING:10 CROP:101 HEADCROP:0 MINLEN:80.