. Author manuscript; available in PMC: 2019 Feb 4.

Published in final edited form as: Trends Mol Med. 2018 Feb 4;24(2):221–235. doi: 10.1016/j.molmed.2017.12.008

Table 1.

Penalized Regression Algorithms Applied to the Nicotine Metabolism Dataset. The table includes the R packages implementing it, and the primary research articles describing the algorithms.

Method	R-Package	Reference
LASSO	glmnet	Tibshirani (1996) [49]
Elastic net	glmnet	Zou and Hastie (2005) [51]
Adaptive LASSO	parcor	Zou (2006) [90]
SCAD	ncvreg	Fan and Li (2001) [91]
MCP	ncvreg	Zhang (2010) [92]
SCAD-Ridge	ncvreg	Breheny and Huang (2011) [93]
MCP-Ridge	ncvreg	Breheny and Huang (2011) [93]
Dantzig Selector	flare	Candes and Tao (2007) [94]
lq LASSO	flare	Li et al. (2015) [95]