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. 2018 Feb 9;19(Suppl 3):0. doi: 10.1186/s12864-018-4478-3

Table 5.

Known and candidate reproductivity-related SNP markers related to blood proteins

Gene dbSNP [6] rel. 147 or see [Ref] 5′ flank wt
mut
3′ flank KD, nM Known diseases (SNP markers) or hypothetical disease (candidate SNP markers) [Ref] or [this work]
wt
mut
Δ Z α ρ
HBB rs397509430 gggctgggca t
-
atacaacagt 5
29
34 10-6 A malaria resistance and thalassemia [176]
rs33980857 gggctgggca t
a,g,c
atacaacagt 5
21
27 10-6 A
rs34598529 ggctgggcat a
g
aaagtcaggg 5
18
24 10-6 A
rs33931746 gctgggcata a
g,c
aagtcagggc 5
11
14 10-6 A
rs33981098 agggctgggc a
g,c
taaaagtcag 5
9
10 10-6 A
rs34500389 cagggctggg c
a,t,g
ataaaagtca 5
6
3 10-2 C
(hypothetically) the same disease; heterozygotes “wt-mut” are still more viable according to most of clinical indicators in comparison with both homozygotes “wt-wt” and “mut-mut” [this work], [185]
rs63750953 ctgggcataa aa
-
gtcagggcag 5
8
9 10 -6 A
rs281864525 tgggcataaa a
c
gtcagggcag 5
7
7 10 -6 A
rs117785782 ggctgagggt t
c
tgaagtccaa 28
39
7 10 -6 A
HBD rs35518301 caggaccagc a
g
taaaaggcag 4
8
11 10-6 A malaria resistance and thalassemia [176]
(hypothetically) the same disease; heterozygotes “wt-mut” are still more viable according to most of clinical indicators [this work], [185]
rs34166473 aggaccagca t
c
aaaaggcagg 4
8
18 10 -6 A
HBG2 rs745580140 ggagttgctc ta
-
cacaagctct 11
22
10 10 -6 A
ACKR1 rs2814778 ttggctctta t
c
cttggaagca 10
12
4 10-3 B low white-blood-cell count and resistance to malaria, (hypothetically) pre-eclampsia [177, 178], [this work], [186]
MBL2 rs72661131 tctatttcta t
c
atagcctgca 2
4
12 10-6 A variable immunedefici-ency, pre-eclampsia, stroke, [190192]
(hypothetically) the same disease; higher risks of recurrent vulvovaginal infections [this work], [187]
rs562962093 atctatttct a
g
tatagcctgc 2
5
15 10-6 A
rs567653539 tttctatata g
a
cctgcaccca 2
1
12 10-6 A (hypothetically) reduced risks of recurrent vulvovaginal infections
MMP12 rs2276109 gatatcaact a
g
tgagtcactc 11
14
3 10-2 C lower risk of psoriasis, systemic sclerosis, asthma [193195]
(hypothetically), higher risk of ovarian hyper-stimulation syndrome [this work], [188]
rs572527200 gatgatatca a
g
ctatgagtca 11
14
3 10-2 C
F2 rs564528021 agttcaacat t
c
aacccagagg 13
9
7 10-6 A (hypothetically) high risk of pre-eclampsia [this work], [189]
rs752364393 caacattaac c
t
cagaggggtc 13
11
3 10-3 B

See “Note” under Table 1