descriptor |
Member of the tag. Could be a key-value pair or a keyless entry. |
human readable |
A strong emphasis is placed on human readability for proteoform names. Proteoforms should be named in a manner that allows general audience members to know exactly the sequence of amino acids and the positions of any modifications, described in as accurate detail as possible. |
key |
An optional element of a descriptor that specifies the descriptor type. It must be followed by a colon and a value. |
machine readable |
Adherence to the conventions described above should facilitate the creation and utilization of generic parsers so that proteoforms can be exchanged between users using a computer interface. |
modification |
Includes the addition and subtraction of specific atoms, atom combinations, and/or masses at a specific residue in a proteoform. |
tag |
The specified way of writing a localized modification. Everything between “[” and “]” (inclusive). A collection of descriptors. |
value |
Contents of a descriptor, such as the mass, chemical composition, or modification name. |