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. Author manuscript; available in PMC: 2018 Mar 5.
Published in final edited form as: Cell Metab. 2017 Nov 9;27(1):85–100.e8. doi: 10.1016/j.cmet.2017.10.006

KEY RESOURCES TABLE.

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Anti-mouse CD3 BioXCell Clone: 145-2C11; Cat# BE0001-1; RRID: AB_1107634
Anti-mouse CD28 BioXCell Clone: 37.51; Cat# BE0015-1; RRID: AB_1107624
Anti-mouse IL4 BioXCell Clone: 11B11; Cat# BE0045; RRID: AB_1107707
Anti-mouse IFNγ BioXCell Clone: XMG1.2; Cat# BE0055; RRID: AB_1107694
CD4-PE eBioscience Clone: GK5.1; Cat# 12-0041-83; RRID: AB_465506
T-bet-Percp/Cy5.5 eBioscience Clone: 4B10; Cat# 45-5825-80; RRID: AB_953657
RORγ-APC eBioscience Clone: AFKJS-9; Cat# 17-6988-80; RRID: AB_10609207
IRF-4-eFluor 660 eBioscience Clone: 3E4; Cat# 50-9858-80; RRID: AB_2574393
CXCR3-PE eBioscience Clone: CXCR3-173; Cat# 12-1831-80; RRID: AB_1210734
CD45.2-PE eBioscience Clone: 104; Cat# 12-0454-81; RRID: AB_465678
CD39-PE/Cy7 eBioscience Clone: eBioA1 (A1); Cat# 25-0391-80; RRID: AB_1582280
CD90.1-APC eBioscience Clone: HIS51; Cat# 17-0900-82; RRID: AB_1272252
CD90.1-Pacific Blue eBioscience Clone: HIS51; Cat# 48-0900-80; RRID: AB_1272254
EOMES-PE eBioscience Clone: Dan11mag; Cat# 12-4875-80; RRID: AB_1603275
CD4-PE/Cy7 Biolegend Clone: GK5.1; Cat# 100422; RRID: AB_312707
CD4-APC Biolegend Clone: GK5.1; Cat# 100412; RRID: AB_312697
CD4-APC/Cy7 Biolegend Clone: GK5.1; Cat# 100414; RRID: AB_312699
CD8-PE/Cy7 Biolegend Clone: 53-6.7; Cat# 100722; RRID: AB_312761
CD8-APC Biolegend Clone: 53-6.7; Cat# 100712; RRID: AB_312751
CD8-FITC Biolegend Clone: 53-6.7; Cat# 100706; RRID: AB_312745
IL17-PE Biolegend Clone: TC11-18H10.1; Cat# 506904; RRID: AB_315464
IL17-Pacific Blue Biolegend Clone: TC11-18H10.1; Cat# 506918; RRID: AB_893544
IFNγ-PE Biolegend Clone: XMG1.2; Cat# 505808; RRID: AB_315402
IFNγ-Alexa647 Biolegend Clone: XMG1.2; Cat# 505814; RRID: AB_493314
T-bet-PE Biolegend Clone: 4B10; Cat# 644809; RRID: AB_2028583
CCR5-PE Biolegend Clone: HM-CCR5; Cat# 107005; RRID: AB_313300
CCR6-PE Biolegend Clone: 29-2L17; Cat# 129803; RRID: AB_1279139
CCR7-PE Biolegend Clone: 4B12; Cat# 120105; RRID: AB_389357
CD73-Pacific Blue Biolegend Clone: Ty/11.8; Cat# 127212; RRID: AB_11219190
CD38-PE Biolegend Clone: 90; Cat# 102707; RRID: AB_312928
CD38-APC Biolegend Clone: 90; Cat# 102711; RRID: AB_312932
CD71-PE/Cy7 Biolegend Clone: RI7217; Cat# 113811; RRID: AB_2203383
PD1-PE Biolegend Clone: RMP1-30; Cat# 109103; RRID: AB_313420
PD1-PE/Cy7 Biolegend Clone: RMP1-30; Cat# 109109; RRID: AB_572016
CD98-PE Biolegend Clone: RL388; Cat# 128207; RRID: AB_1186107
Annexin V FITC BD Biosciences Clone: N/A; Cat# 51-65874X; RRID: N/A
CD45.1-APC BD Biosciences Clone: A20; Cat# 558701; RRID: AB_1645214
Vβ13-FITC BD Biosciences Clone: MR1 2-3; Cat# 553204; RRID: AB_394706
Vβ14-FITC BD Biosciences Clone: 14-2; Cat# 553258; RRID: AB_394738
Vβ12-FITC Thermo Fisher Scientific Clone: S511; Cat# TCR2654; RRID: AB_417092
Slc1a5 Thermo Fisher Scientific Clone: N/A; Cat# PA5-50527; RRID: AB_2635980
Anti-Goat Alexa647 Thermo Fisher Scientific Clone: N/A; Cat# A21447; RRID: AB_141844
pFoxo1 (S256) Cell Signaling Technology Clone: N/A; Cat# 9461; RRID: AB_329831
Phospho-S6 Ribosomal Protein (Ser235/236)-Alexa647 Cell Signaling Technology Clone: D57.2.2E; Cat# 4851; RRID: AB_916160
Hexokinase I (HK I) Cell Signaling Technology Clone: C35C4; Cat# 2024S; RRID: AB_2116996
Hexokinase II (HK II) Cell Signaling Technology Clone: C64G5; Cat# 2867S; RRID: AB_2232946
Platelet-type phosphofructokinase (PFKP) Cell Signaling Technology Clone: D4B2; Cat# 8164S; RRID: N/A
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) Cell Signaling Technology Clone: D16H11; Cat# 5174S; RRID: AB_10622025
Lactate dehydrogenase (LDH) Cell Signaling Technology Clone: C4B5; Cat# 3582S; RRID: AB_2066887
Pyruvate kinase M 1/2 (PKM1/2) Cell Signaling Technology Clone: C103A3; Cat# 3190S; RRID: AB_2163695
Pyruvate Dehydrogenase Cell Signaling Technology Clone: C54G1; Cat# 3205S; RRID: AB_2162926
Glutamate Dehydrogenase 1/2 (Glud1/12) Cell Signaling Technology Clone: D9F7P; Cat# 12793S; RRID: N/A
Foxo1 Cell Signaling Technology Clone: C29H4; Cat# 2880S; RRID: AB_2106495
Acetylated-Lysine Cell Signaling Technology Clone: N/A; Cat# 9441S; RRID: N/A
Anti-Rabbit HRP Cell Signaling Technology Clone: N/A; Cat# 7074S; RRID: N/A
PGC1 α-Alexa647 Novus Biologicals Clone: N/A; Cat# NBP1-04676AF647; RRID: N/A
Glutaminase (Gls) Novus Biologicals Clone: N/A; Cat# NBP2-29940; RRID: N/A
Anti-Rabbit PE Jackson ImmunoResearch Laboratories Clone: N/A; Cat# 111-116-144; RRID: AB_2337985
Anti-Rabbit Alexa647 Jackson ImmunoResearch Laboratories Clone: N/A; Cat# 111-607-003; RRID: AB_2338084
xCT Santa Cruz Biotechnology Clone: Q-18; Cat# Sc79360; RRID: AB_2190856
InVivoMab anti-mouse IL-17A BioXCell Clone: 17F3; Cat# BE0173; RRID: AB_10950102
InVivoMAb anti-mouse IFNγ BioXCell Clone: XMG1.2; Cat# BE0055; RRID: AB_1107694
Anti CD38 VHH Single Domain Antibody Creative Biolabs Clone: N/A; Cat# NABL-079; RRID: N/A
Chemicals, Peptides, and Recombinant Proteins
FK866 Cayman Chemical Cat# 13287
Ex527 Cayman Chemical Cat# 10009798
Etomoxir Cayman Chemical Cat# 11969
AKTi Cayman Chemical Cat# 14870
SC-79 Sigma Aldrich Cat# SML0749
6-Diazo-5-oxo-L-norleucine (DON) Sigma Aldrich Cat# D2141
2-Deoxy-D-glucose (2DG) Sigma Aldrich Cat# D6134
Antimycin A Sigma Aldrich Cat# A8674
Rotenone Sigma Aldrich Cat# R8875
Oligomycin Sigma Aldrich Cat# O4876
FCCP Sigma Aldrich Cat# C2920
IMDM GE Healthcare, HyClone Cat# SH30228.01
RPMI-1640 (Glucose free) Thermo Fisher Scientific Cat# 11879-020
RPMI-1640 (glutamine free) Thermo Fisher Scientific Cat# 21870-076
Penicillin-Streptomycin Corning Cat# 30-001-CI
Fetal Bovine Serum (FBS) Atlanta Biologicals Cat# S11150
rIL12 Biolegend Cat# 577004
rIL6 Biolegend Cat# 575704
rIL1β Biolegend Cat# 575104
rIL23 Biolegend Cat# 589002
rTGFβ Biolegend Cat# 580702
rhIL2 NCI, Biological Resources Branch https://ncifrederick.cancer.gov/research/brb/productDataSheets/cytokineHumanInterleukins/IL-2Bulk.aspx
Foxp3 / Transcription Factor Staining Buffer Set Thermo Fisher Scientific Cat# 00-5523
Fixation/Permeabilization Solution Kit BD Biosciences Cat# 554714
Mouse CD4+ T cell isolation kit Miltenyi Biotec Cat# 130-104-454
hgp10025–33 peptide (KVPRNQDW) Genscript Cat# RP20344
TRP-1106–130 peptide (SGHNCGTCR PGWRGAACNQKILTVR) NeoMPS Custom synthesized
TCR-I peptide (SAINNYAQKL) Sydlabs Cat# 075472
RIPA Lysis Buffer Thermo Fisher Scientific Cat# 89900
NE-PER Nuclear and Cytoplasmic Extraction Reagents Thermo Fisher Scientific Cat# 78833
Critical Commercial Assays
CellTrace CFSE Cell Proliferation Kit Thermo Fisher Scientific Cat# C34554
CellTrace Violet Cell Proliferation Kit Thermo Fisher Scientific Cat# C34557
NAD/NADH Cell-Based Assay Kit Cayman Chemical Cat# 600480
Universal SIRT Activity Assay Kit abcam Cat# ab156915
TransAM FKHR (FOXO1) Transcription Factor ELISA Kits Active Motif Cat# 46396
Akt kinase activity kit Enzo Life Sciences Cat# ADI-EKS-400A
Immunoprecipitation (IP) Kit Biovision Cat# K286-25
iScript cDNA Synthesis Kit Biorad Cat# 1708891
SsoAdvanced Universal SYBR Green Supermix Biorad Cat# 1725274
Deposited Data
Gene microarray dataset This paper ArrayExpress accession # E-MTAB-5237
Experimental Models: Cell Lines
B16-F10 ATCC CRL-6475
B16-F10-A2+ Rolf Kiessling, Karolinska Institute, Stockholm, Sweden. Mycoplasma testing was done in Mehrotra lab. N/A
Experimental Models: Organisms/Strains
C57BL/6 Jackson Laboratory Stock# 000664
C57BL/6-Tg(HLA-A2.1)1Enge/J Jackson Laboratory Stock# 003475
B6.129S7-Rag1tm1Mom/J Jackson Laboratory Stock# 002216
B6.129P2-Cd38tm1Lnd/J Jackson Laboratory Stock# 003727
B6;129-Sirt1tm1Ygu/J Jackson Laboratory Stock# 008041
Tg(Cd4-cre)1Cwi/BfluJ Jackson Laboratory Stock# 017336
B6.SJL-Ptprca Pepcb/BoyJ Jackson Laboratory Stock# 002014
B6.129S7-Ifngtm1Ts/J Jackson Laboratory Stock# 002287
B6.Cg-Rag1tm1Mom Tyrp1B-w Tg(Tcra,Tcrb)9Rest/J Jackson Laboratory Stock# 008684
B6.Cg-Thy1a/Cy Tg(TcraTcrb)8Rest/J Jackson Laboratory Stock# 005023
C57BL/6-Tg(TRAMP)8247Ng/J Jackson Laboratory Stock# 003135
IFNγThy1.1 knockin Casey T. Weaver, University of Alabama at Birmingham (UAB) (Harrington et al., 2008)
Foxo1fl/flLckcre Melanie Gubbels Bupp, Randolph-Macon College, VA (Gubbels Bupp et al., 2009)
TCR-I Jennifer Wu, MUSC (Staveley-O’Carroll et al., 2003)
Oligonucleotides
Primers for qPCR, see Table S4
Recombinant DNA
MSGV1-TRP-1 vector (Kerkar et al., 2011) N/A
LV-TCR/sr39TK-GFP vector (Koya et al., 2010) N/A
Software and Algorithms
FlowJo 10.2 TreeStar, OR https://www.flowjo.com/solutions/flowjo/downloads/
Prism 5 GraphPad https://www.graphpad.com/scientiflc-software/prism/
Agilent Seahorse Wave 2.4 Agilent http://www.agilent.com/en-us/products/cell-analysis-(seahorse)/seahorse-wave-software
CFX Manager 3.1 Biorad http://www.bio-rad.com/en-us/sku/soft-cfx-31-patch-cfx-manager-software-v3-1-upgrade
GenomeStudio software Illumina https://www.illumina.com/techniques/microarrays/array-data-analysis-experimental-design/genomestudio.html
PIMENTo (Sásik et al., 2004) https://github.com/MUSC-CGM/PIMENTo
ToppGene Suite (Chen et al., 2009) https://toppgene.cchmc.org/
Venny This paper http://bioinfogp.cnb.csic.es/tools/venny/index.html