Table 2.
nsam | Nucleotide variability | Patterns of variability | Mismatch distribution | Divergenceb | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|
S | θ | Π | Tajima’s D | Fu&Li’s D | Fay&Wu’s H | s.d. | Skewness | Kurtosis | K | ||
Non-Asiaa | 19 | 6 | 0.00029 | 0.00030 | 0.228 | 0.781 | −1.198 | 2.29 | −1.009 | −2.036 | 0.023 |
Asia | 9 | 24 | 0.00138 | 0.00158 | 0.875 | 0.864 | 0.163 | 12.15 | −1.044 | −2.184 | 0.023 |
a The Non-Asian sample contains European wild boars (EWB), Mediterranean local pigs (MEDLP), Near-East wild boars (NEWB), African wild boars (AFWB) and African pigs (AFP). The Asian sample contains Asian wild boars (AWB) and Asian local pigs (ALP). bThe divergence of S. scrofa populations is calculated regarding to B. Babyrussa. nsam number of samples, Kurtosis fourth moment of Tajima’s θ estimator, S number of polymorphic sites, s.d. standard deviation of Tajima’s θ estimator, Skewness third moment of Tajima’s θ estimator, θ Watterson estimator, π nucleotide diversity. The number of silent positions analyzed is 7561