Table 1.
Region-based analysis of TRAP1 variants
Group | Number of variants | MAC controls | MAC cases | Burden P-value | SKAT-O P-value | SKAT P-value |
---|---|---|---|---|---|---|
The Norwegian ParkWest sample | ||||||
Non-synonymous | 12 | 18 | 12 | 0.407 | 0.648 | 0.566 |
CADD10 | 11 | 14 | 7 | 0.130 | 0.221 | 0.806 |
CADD15 | 9 | 7 | 4 | 0.229 | 0.379 | 0.751 |
CADD20 | 9 | 7 | 4 | 0.229 | 0.379 | 0.751 |
CADD30 | 2 | 2 | 0 | 0.326 | 0.489 | 0.786 |
Synonymous | 2 | 2 | 0 | 0.332 | 0.746 | 0.746 |
The PPMI sample | ||||||
Non-synonymous | 9 | 5 | 7 | 0.279 | 0.367 | 0.255 |
CADD10 | 8 | 5 | 6 | 0.259 | 0.382 | 0.205 |
CADD15 | 8 | 5 | 6 | 0.259 | 0.382 | 0.205 |
CADD20 | 6 | 4 | 5 | 0.293 | 0.312 | 0.259 |
CADD30 | 2 | 1 | 1 | 0.799 | 0.277 | 0.277 |
Synonymous | 2 | 0 | 2 | 0.338 | 0.739 | 0.739 |
CADD = non-synonymous variants with CADD score >10, 15, 20 and 30, respectively.
MAC = minor allele count.
P-values are uncorrected for multiple testing.