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. Author manuscript; available in PMC: 2018 Mar 5.
Published in final edited form as: Biochemistry. 2017 Apr 16;56(16):2175–2183. doi: 10.1021/acs.biochem.6b01166

Figure 2.

Figure 2

Comparison of base pairing probabilities for the in virio and capsid-free RNA states. Probabilities were calculated from SHAPE data based on the total ensemble of structures using SuperFold.16 Base pairs are colored by their probabilities (legend). The central bar defines the three structural domains that characterize both RNAs; landmarks in the central T domain are indicated below structures.