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. 2017 Nov 3;31(3):327–334. doi: 10.5713/ajas.17.0276

Table 1.

Summary of significant SNPs (p<0.001) associated with carcass weight in 220 Hanwoo cattle using the additive model

SNP Chr Position −log10 (p-value) Gene1) Reported carcass QTL β (kg) Vg MAF d0 d1 d2
Hapmap60145-rs29013637 24 27381101 4.55 - 26.6–30.0 Mb −22.57 0.090 0.43 41 105 74
ARS-BFGL-NGS-28234 14 21343649 4.30 - 21.1–21.1 Mb 43.45 0.084 0.07 1 30 189
ARS-BFGL-NGS-21717 5 117102295 4.09 LOC101903200 - −19.24 0.080 0.46 44 115 61
ARS-BFGL-NGS-7347 20 67090770 3.95 - - 20.28 0.077 0.50 54 112 54
BovineHD1100008236 11 27645835 3.71 - - −25.14 0.072 0.28 18 88 112
BovineHD0200020296 2 70647552 3.58 - 62.2–75.6 Mb −32.19 0.069 0.08 0 37 183
BTB-00874898 28 6575192 3.57 - 4.3–8.7 Mb −32.10 0.069 0.09 2 37 181
Hapmap51939-BTA-21630 12 36708993 3.53 PARP4 - −22.74 0.068 0.20 13 63 142
ARS-BFGL-NGS-22647 3 1779182 3.37 GPA33 - −34.34 0.064 0.07 2 26 191
BTB-00646159 16 52211744 3.30 NADK 50.0–51.0 Mb 18.63 0.063 0.43 37 117 66
BovineHD0900009902 9 36090095 3.28 - - 19.25 0.063 0.46 41 119 60
ARS-BFGL-NGS-6936 14 34148235 3.17 PREX2 28.1–46.8 Mb 30.88 0.060 0.10 1 42 177
BTB-02072074 21 38226290 3.12 - - 22.19 0.059 0.39 28 116 75
BovineHD0600013305 6 48433095 3.10 - 45.9–53.1 Mb −18.10 0.059 0.37 36 88 95
BovineHD0900007660 9 28282574 3.06 - - −16.47 0.058 0.36 25 108 87
BTA-54082-no-rs 22 32257185 3.01 FRMD4B 28.5–45.7 Mb −21.53 0.057 0.19 8 68 143
BovineHD0100034972 1 123851563 3.01 - 26.6–30.0 Mb −22.76 0.057 0.18 7 66 146

SNP, single nucleotide polymorphism; QTL, quantitative trait loci; β, the allele substitution effect; Vg, the proportion of variance explained by each SNP; MAF, minor allele frequency; d0, d1, d2, the number of individuals with 2, 1, and copies of the minor allele.

1)

PARP4, poly (ADP-ribose) polymerase family member 4; GPA33, glycoprotein A33; NADK, NAD kinase; PREX2, phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2; FRMD4B, FERM domain containing 4B.