Table 2.

Genetic diversity indexes and neutrality tests for population mitochondrial genomes

Population	Size	No. HT	Nucleotide diversity	HT diversity	Tajima's D	Fu's Fs
Sarikoli Tajik	86	67	0.00204 ± 0.00007	0.993 ± 0.003	−2.180**	−17.648**
Wakhi Tajik	66	40	0.00187 ± 0.00009	0.979 ± 0.007	−1.811*	−1.634
Pamiri Tajik	50	38	0.00180 ± 0.00013	0.985 ± 0.008	−1.842**	−4.870
East Pamir Kyrgyz	68	45	0.00204 ± 0.00007	0.986 ± 0.005	−2.021*	−3.214
Lowland Kyrgyz	54	45	0.00213 ± 0.00007	0.994 ± 0.005	−2.187**	−7.868*
Lowland Tajik	28	23	0.00168 ± 0.00013	0.984 ± 0.014	−1.912*	−2.117
Lowland Uygur	27	24	0.00206 ± 0.00011	0.991 ± 0.013	−2.025*	−2.822
Beijing Han Chinese	103	103	0.00211 ± 0.00005	1.000 ± 0.0014	−2.442**	−24.021**
Punjabi	96	87	0.00198 ± 0.00006	0.995 ± 0.004	−2.456**	−24.008**
Qashqai	112	94	0.00192 ± 0.00007	0.996 ± 0.002	−2.439**	−23.940**
Persian	181	163	0.00198 ± 0.00006	0.9985 ± 0.0009	−2.575**	−23.757**
Azeri	30	30	0.00161 ± 0.00011	1.000 ± 0.009	−2.017**	−6.764*
Armenian	30	29	0.00199 ± 0.00012	0.998 ± 0.009	−2.132**	−11.175**
Georgian	28	28	0.00151 ± 0.00013	1.000 ± 0.010	−2.217**	−9.834**

Note: The calculation is based on 16511 bp mtDNA sequences. The variants 309.XC, 315.1C, 16182C, 16183C, 16193.1C(C), 16519, and heteroplasmy sites are not considered

HT haplotype

*P<0.05; **P<0.01