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. 2017 Dec 15;20(2):785–799. doi: 10.1111/1462-2920.14012

Table 2.

Hydrolytic enzymes detected over time in the exoproteome of R. pomeroyi DSS‐3 when co‐cultured with Synechococcus sp. WH7803.

Locus ID Annotation (possible function) Substrate Day 1a Day 3a Day 7a Day 14a Day 21a Day 32a Day 60a Day 100a Average
AAV93776 Hypothetical SPO0459 (pectate lyase) Polysaccharides ASW 4.94 4.05 3.23 3.08 0.04 0.02 0.08 1.63 2.13
SW 1.43 1.88 2.16 2.29 3.08 3.12 3.84 3.61 2.68
AAV95476 BNR/Asp‐box protein (sialidase) Polysaccharides ASW 1.14 1.00 0.99 1.35 0.80 0.43 0.51 1.07 0.91
SW 1.07 1.08 1.31 1.22 1.77 1.59 1.49 1.25 1.35
AAV95139 Twin‐arginine pathway (phosphatase PhoX) Phosphates ASW 0.58 0.56 0.40 0.33 0.16 0.88 0.65 0.15 0.46
SW 0.53 0.54 0.57 0.28 0.13 0.08 0.02 < 0.01 0.27
AAV96145 Ser/Thr Phosphatase/nucleotidase (nucleotidase) Nucleotides ASW 0.04 0.05 0.27 0.13 0.93 0.77 0.70 0.34 0.40
SW 0.06 0.18 0.23 0.44 0.69 0.58 1.02 1.49 0.59
AAV95890 Protease, S2 family (serine protease) Proteins ASW 0.03 0.01 0.01 0.02 0.51 0.56 0.55 0.09 0.22
SW < 0.01 0.01 0.01 0.01 0.01 0.03 0.07 0.13 0.03
AAV96272 Metallo‐beta‐lactamase (alkyl sulfatase) Others ASW 0.06 0.11 0.12 0.22 0.38 0.26 0.28 0.22 0.21
SW 0.03 0.10 0.23 0.28 0.35 0.37 0.38 0.43 0.27
AAV93580 Alkaline phosphatase (phosphatase PhoD) Phosphates ASW 0.01 0.04 0.03 0.01 < 0.01 0.43 0.78 0.01 0.17
SW 0.01 0.06 0.04 0.02 0.01 0.02 0.01 < 0.01 0.02
AAV95931 LysM domain/M23/M37 peptidase (peptidase family M23) Proteins ASW 0.12 0.28 0.19 0.15 0.11 0.18 0.11 0.10 0.16
SW 0.05 0.08 0.07 0.06 0.02 0.02 0.01 0.06 0.05
AAV97448 Amidohydrolase protein (amidohydrolase) Others ASW 0.04 0.03 0.04 0.04 0.32 0.26 0.27 0.16 0.14
SW 0.02 0.07 0.11 0.15 0.15 0.08 0.18 0.40 0.14
AAV95236 Beta‐lactamase protein (carboxypeptidase) Proteins ASW 0.01 0.05 0.24 0.36 0.03 0.05 0.05 0.09 0.11
SW < 0.01 < 0.01 < 0.01 0.01 < 0.01 < 0.01 < 0.01 < 0.01 < 0.01
AAV96841 Peptidoglycan‐binding protein (glycoside hydrolase) Peptidoglycan ASW 0.06 0.13 0.07 0.11 0.06 0.10 0.12 0.04 0.09
SW 0.02 0.09 0.07 0.06 0.03 0.01 0.01 0.03 0.04
AAV94622 Periplasmic serine protease (serine proteases) Proteins ASW 0.04 0.05 0.04 0.11 0.06 0.06 0.04 0.03 0.05
SW 0.01 0.02 0.01 0.04 0.02 0.02 0.01 < 0.01 0.01
AAV95689 Fumarylacetoacetate hydrolase (aromatic hydrolase) Others ASW 0.02 0.02 0.05 0.04 0.09 0.07 0.06 0.03 0.05
SW 0.02 0.03 0.03 0.03 0.02 0.03 0.06 0.05 0.03
AAV96493 Glycosyl hydrolase, family 25 (acetylmuramidase) Peptidoglycan ASW 0.08 0.10 0.10 < 0.01 < 0.01 < 0.01 < 0.01 0.01 0.04
SW 0.03 < 0.01 < 0.01 < 0.01 0.01 < 0.01 < 0.01 < 0.01 0.01
AAV94066 Cyclase family protein (aromatic hydrolase) Others ASW < 0.01 < 0.01 < 0.01 < 0.01 0.07 0.07 0.06 0.04 0.03
SW < 0.01 < 0.01 0.01 0.01 0.01 0.02 0.04 0.07 0.02
AAV93452 Murein endopeptidase (murein endopeptidase) Peptidoglycan ASW < 0.01 0.01 0.02 0.02 0.01 0.02 0.08 0.02 0.02
SW < 0.01 < 0.01 0.02 < 0.01 < 0.01 < 0.01 < 0.01 < 0.01 0.01
AAV95558 Hypothetical SPO2296 (lysozyme) Peptidoglycan ASW 0.02 < 0.01 0.01 0.01 0.01 0.01 0.04 0.03 0.02
SW 0.02 < 0.01 < 0.01 < 0.01 < 0.01 0.02 < 0.01 < 0.01 0.01
AAV94260 Amidohydrolase protein (amidohydrolase) Others ASW < 0.01 < 0.01 < 0.01 < 0.01 0.04 0.02 0.02 0.01 0.01
SW 0.01 < 0.01 < 0.01 0.01 < 0.01 < 0.01 < 0.01 < 0.01 < 0.01
AAV96597 Peptidase, M16 family (peptidase M16) Proteins ASW < 0.01 < 0.01 < 0.01 < 0.01 0.03 0.03 0.02 < 0.01 0.01
SW < 0.01 < 0.01 < 0.01 0.01 < 0.01 < 0.01 < 0.01 < 0.01 < 0.01
a

The values shown are the average of relative abundance obtained from three biological replicate cultures. The full data can be obtained from Supporting Information Table S5.