Table 1.
Homologous genomic regions differentiating wilds from domestics in Ovis and Capra
| Chromosome | Code | Gene | Δπ |
|---|---|---|---|
| Ovis 1 | Capra 3 | ENSOARG00000006800 | SLAMF7 | Novel gene | SLAM family member 7 | 0.12 | 0.11 |
| Ovis 1 | Capra 3 | SLAMF1 | Signaling lymphocytic activation molecule precursor 1 | 0.13 | 0.10 |
| Ovis 1 | Capra 1 | Intergenic | None | 0.09 | 0.14 |
| Ovis 2 | Capra 2 | Intergenic | None | 0.15 | 0.08 |
| Ovis 3 | Capra 5 | KITLG | Proto-oncogene receptor tyrosine kinase ligand | 0.18 | −0.15 |
| Ovis 3 | Capra 5 | KITLG | Proto-oncogene receptor tyrosine kinase ligand | 0.26 | −0.21 |
| Ovis 3| Capra 5 | HMGI-C | High mobility group protein I-C | 0.11 | 0.12 |
| Ovis 6 | Capra 6 | HERC5 | HERC6 | HECT & RLD domain containing E3 ubiquitin protein ligase 5 | 6 | 0.24 | −0.11 |
| Ovis 6 | Capra 6 | SLC34A2 | Intergenic | Solute carrier family 34 member 2 | None | 0.18 | 0.23 |
| Ovis 7 | Capra 10 | Intergenic | None | 0.08 | 0.20 |
| Ovis 9 | Capra 14 | POP1 | Ribonuclease P/MRP subunit | −0.03 | 0.11 |
| Ovis 10 | Capra 12 | NBEA | Neurobeachin | 0.11 | 0.16 |
| Ovis 10 | Capra 12 | CRYL1 | Crystallin lambda 1 | 0.01 | 0.19 |
| Ovis 11 | Capra 19 | RNF213 | Ring finger protein 213 | 0.13 | −0.26 |
| Ovis 15 | Capra 15 | U1 | HBE1 | U1 spliceosomal RNA | Hemoglobin subunit epsilon-1 | 0.22 | 0.09 |
| Ovis 16 | Capra 20 | TRIP13 | SLC12A7 | Thyroid hormone receptor interactor 13 | Solute carrier family 12 member 7 | 0.16 | −0.16 |
| Ovis 20 | Capra 23 | SUPT3H | SPT3 homolog, SAGA and STAGA complex component | 0.08 | 0.06 |
| Ovis 20 | Capra 23 | EXOC2 | DUSP22 | Exocyst complex component 2 | Dual specificity phosphatase 22 | 0.25 | 0.03 |
| Ovis 24 | Capra 25 | HBM | LUC7L | Hemoglobin subunit Mu | LUC like 7 | 0.33 | 0.12 |
| Ovis 26 | Capra 27 | MTMR7 | Myotubularin related protein 7 | 0.15 | 0.07 |
When different in both genera, information is given for Ovis | Capra. Positive Δπ indicates a lower diversity in domestics (e.g., directional positive or stabilizing selection in domestics) while negative values indicate a lower diversity in the wilds (e.g., diversifying selection / relaxation in domestics or recent positive selection in the wilds). The phenotypic effects presented are inferred from the bibliography and classified in a livestock perspective. The Uniprot GO terms associated to these genes are available from Supplementary Data 4