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| Pathway | NO Backgrounds (C1) | MA Backgrounds (C2) | Up-Regulated (C3–C7) | Down-Regulated (C8–C10) | C11 and C12 | Total |
|---|---|---|---|---|---|---|
| Calcium signaling | 12 | 11 | 23 | 31 | 2 | 79 |
| ICE1-CBF-COR pathway | 9 | 3 | 47 | 6 | 2 | 67 |
| ABA-dependent pathway | 0 | 0 | 10 | 4 | 0 | 14 |
| Flower pathways | 42 | 33 | 67 | 53 | 3 | 198 |
