Table I. Some clusters are significantly enriched in gene annotations, suggesting that genes with related processes respond similarly to ACC, with clusters in order of response rate.
Cluster | Gene Count | Cluster Regulation | Overrepresented Cluster Annotations | Transcript Changes with SLR ≥ 0.05 |
---|---|---|---|---|
4 | 30 | Up | Ethylene/hormone response, two-component signal transduction | 30 min to 24 h |
5 | 28 | Complex | Oxidoreductase activity | 30 min to 24 h |
7 | 21 | Down | None | 1 to 24 h |
10 | 15 | Down | None | 2 to 4 h |
1 | 111 | Up | None | 4 to 24 h |
2 | 48 | Down | Transferase activity | 4 to 24 h |
6 | 22 | Down | Metal/ion binding | 4 to 24 h |
8 | 18 | Down | None | 8 to 24 h |
9 | 18 | Down | Cell wall biogenesis, biosynthesis, and organization | 12 to 24 h |
3 | 40 | Down | Oxidoreductase activity | 24 h |