Skip to main content
. 2018 Feb 26;12(2):e0006301. doi: 10.1371/journal.pntd.0006301

Table 2. Data collection and refinement statistics for the HGPRT-I.ANPs and HGXPRT.ANPs complexes.

HGPRT-I HGXPRT
Complex compound 6 compound 7 compound 1 compound 2 compound 7 compound 2
Crystal parameters
a, b, c (Å) 116.0, 93.9, 44.7 44.7, 94.4, 110.0 94.9, 108.9, 45.0 89.5, 94.6, 109.7 61.3, 107.8, 117.7 61.3, 107.3, 117.4
α, β, γ(°) 90, 107.8, 90 90, 90, 90 90, 90, 90 90, 90, 90 90, 96.3, 90 90, 96.61, 90
Space group C 21 P 2 2 21 P 2 2 21 P 2 2 21 P 21 P 21
Crystal size (mm) 0.3 x 0.1 x 0.05 0.3 x 0.3 x 0.1 0.3 x 0.3 x 0.1 0.3 x 0.1 x 0.05 0.2 x 0.1 x 0.05 0.2 x 0.1 x 0.05
Diffraction data
Resolution range (Å) 46.94–1.76 47.53–1.80 47.44–1.84 47.44–1.99 48.97–2.64 48.75–2.28
Observations 163324 (7357) 460142 (22439) 290920 (15619) 606011 (35194) 155191 (14848) 524870 (33272)
Unique reflections 44556 (2210) 43878 (2272) 41021 (2386) 64145 (3961) 44654 (4395) 68796 (4561)
Completeness (%) 98.9 (85.8) 98.8 (88.0) 99.6 (96.0) 99.0 (87.6) 99.2 (94.0) 99.9 (98.6)
Rmerge 0.142 (0.88) 0.133 (0.929) 0.160 (0.82) 0.181 (0.688) 0.076 (0.651) 0.102 (0.726)
Rp.i.m. 0.08 (0.561) 0.045 (0.316) 0.066 (0.371) 0.061 (0.240) 0.048 (0.521) 0.043 (0.309)
<I>/<σ(I)> 8.2 (1.5) 11.3 (2.6) 12.4 (2.4) 12.3 (3.7) 8.8 (1.3) 12.4 (2.0)
Refinement
Resolution limits (Å) 1.760 1.79 1.84 1.99 2.638 2.280
Rwork 0.158 0.183 0.151 0.163 0.191 0.174
Rfree 0.192 0.203 0.189 0.198 0.249 0.216
RMSD bond lengths (Å) 0.018 0.012 0.016 0.009 0.003 0.004
RMSD angles (o) 1.561 1.223 1.389 0.998 0.594 0.604
Clashscore* 6.02 6.25 5.31 5.63 8.23 4.54
Components of the asymmetric unit
Dimers 1 1 1 3 3 3
Visible amino acids A: 2–80,101–204 B: 5–80,103–205 A: 4–80,103–204 B: 4–80, 103–198 A: 5–84,101–199 B: 4–81,102–202 A: 5–84, 101–200 B: 5–84, 103–205 C: 5–81, 103–199 D: 5–81, 103–201 A: 9-114/ 130–234 B: 8-114/ 130–234 C: 8-114/ 132–234 D: 8-114/ 133–234 E: 8-114/ 132–234 F: 8-114/ 131–234 A: 8-115/ 129–234 B: 8-114/ 130–234 C: 9-114/ 132–234 D: 9-114/ 132–234 E: 9-115/ 128–234 F: 8-114/ 129–234
Ligands PP352 (6) x 2, SO4 x 1, PEG x 2, Tris x 2 PP365 (7) x 2, PEG x 2 DA-XII-6 (1) x 2, SO4 x 2, PEG x 2 DA-XIII-44 (2) x 4, PEG x 4 PP365 (7) x 6 DA-XIII-44 (2) x 6
Waters 418 287 467 684 53 658
Mg2+ 2 0 2 8 2 8
Ramachandran plot (%)
Favoured 97.2 96.8 97.1 96.9 96.48 97.8
Outliers 0 0 0.29 0.29 0.16 0.00

Values in parentheses are for the outer resolution shell.

Rmerge=hkli|Ii(hkl)(I(hkl))|/hkliIi(hkl)

Rp.i.m.=hkl[1[N(hkl)1]]1/2i|Ii(hkl)(I(hkl))|/hkliIi(hkl)

where Ii(hkl) is the observed intensity and I(hkl) is the average intensity obtained from multiple observations of symmetry related reflections. *Clashscores defined as the number of bad overlaps ≥ 0.4 Å per thousand atoms.