Table 2. Data collection and refinement statistics for the HGPRT-I.ANPs and HGXPRT.ANPs complexes.
HGPRT-I | HGXPRT | |||||
---|---|---|---|---|---|---|
Complex | compound 6 | compound 7 | compound 1 | compound 2 | compound 7 | compound 2 |
Crystal parameters | ||||||
a, b, c (Å) | 116.0, 93.9, 44.7 | 44.7, 94.4, 110.0 | 94.9, 108.9, 45.0 | 89.5, 94.6, 109.7 | 61.3, 107.8, 117.7 | 61.3, 107.3, 117.4 |
α, β, γ(°) | 90, 107.8, 90 | 90, 90, 90 | 90, 90, 90 | 90, 90, 90 | 90, 96.3, 90 | 90, 96.61, 90 |
Space group | C 21 | P 2 2 21 | P 2 2 21 | P 2 2 21 | P 21 | P 21 |
Crystal size (mm) | 0.3 x 0.1 x 0.05 | 0.3 x 0.3 x 0.1 | 0.3 x 0.3 x 0.1 | 0.3 x 0.1 x 0.05 | 0.2 x 0.1 x 0.05 | 0.2 x 0.1 x 0.05 |
Diffraction data | ||||||
Resolution range (Å) | 46.94–1.76 | 47.53–1.80 | 47.44–1.84 | 47.44–1.99 | 48.97–2.64 | 48.75–2.28 |
Observations | 163324 (7357) | 460142 (22439) | 290920 (15619) | 606011 (35194) | 155191 (14848) | 524870 (33272) |
Unique reflections | 44556 (2210) | 43878 (2272) | 41021 (2386) | 64145 (3961) | 44654 (4395) | 68796 (4561) |
Completeness (%) | 98.9 (85.8) | 98.8 (88.0) | 99.6 (96.0) | 99.0 (87.6) | 99.2 (94.0) | 99.9 (98.6) |
Rmerge | 0.142 (0.88) | 0.133 (0.929) | 0.160 (0.82) | 0.181 (0.688) | 0.076 (0.651) | 0.102 (0.726) |
Rp.i.m. | 0.08 (0.561) | 0.045 (0.316) | 0.066 (0.371) | 0.061 (0.240) | 0.048 (0.521) | 0.043 (0.309) |
<I>/<σ(I)> | 8.2 (1.5) | 11.3 (2.6) | 12.4 (2.4) | 12.3 (3.7) | 8.8 (1.3) | 12.4 (2.0) |
Refinement | ||||||
Resolution limits (Å) | 1.760 | 1.79 | 1.84 | 1.99 | 2.638 | 2.280 |
Rwork | 0.158 | 0.183 | 0.151 | 0.163 | 0.191 | 0.174 |
Rfree | 0.192 | 0.203 | 0.189 | 0.198 | 0.249 | 0.216 |
RMSD bond lengths (Å) | 0.018 | 0.012 | 0.016 | 0.009 | 0.003 | 0.004 |
RMSD angles (o) | 1.561 | 1.223 | 1.389 | 0.998 | 0.594 | 0.604 |
Clashscore* | 6.02 | 6.25 | 5.31 | 5.63 | 8.23 | 4.54 |
Components of the asymmetric unit | ||||||
Dimers | 1 | 1 | 1 | 3 | 3 | 3 |
Visible amino acids | A: 2–80,101–204 B: 5–80,103–205 | A: 4–80,103–204 B: 4–80, 103–198 | A: 5–84,101–199 B: 4–81,102–202 | A: 5–84, 101–200 B: 5–84, 103–205 C: 5–81, 103–199 D: 5–81, 103–201 | A: 9-114/ 130–234 B: 8-114/ 130–234 C: 8-114/ 132–234 D: 8-114/ 133–234 E: 8-114/ 132–234 F: 8-114/ 131–234 | A: 8-115/ 129–234 B: 8-114/ 130–234 C: 9-114/ 132–234 D: 9-114/ 132–234 E: 9-115/ 128–234 F: 8-114/ 129–234 |
Ligands | PP352 (6) x 2, SO4 x 1, PEG x 2, Tris x 2 | PP365 (7) x 2, PEG x 2 | DA-XII-6 (1) x 2, SO4 x 2, PEG x 2 | DA-XIII-44 (2) x 4, PEG x 4 | PP365 (7) x 6 | DA-XIII-44 (2) x 6 |
Waters | 418 | 287 | 467 | 684 | 53 | 658 |
Mg2+ | 2 | 0 | 2 | 8 | 2 | 8 |
Ramachandran plot (%) | ||||||
Favoured | 97.2 | 96.8 | 97.1 | 96.9 | 96.48 | 97.8 |
Outliers | 0 | 0 | 0.29 | 0.29 | 0.16 | 0.00 |
Values in parentheses are for the outer resolution shell.
where Ii(hkl) is the observed intensity and I(hkl) is the average intensity obtained from multiple observations of symmetry related reflections. *Clashscores defined as the number of bad overlaps ≥ 0.4 Å per thousand atoms.