Table 2. 50%, 90%, and 99% credible sets for SNP-, mark-, and path-mapping for simulations using empirical YRI and CEU data.
We compare pathfinder’s performance when using SNP LD from YRI vs from CEU, with respect to the size of its credible sets, averaged across all regions. Standard errors are included next to each measurement.
| method | 50% credible set | 90% credible set | 99% credible set | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SNPs | Marks | Paths | SNPs | Marks | Paths | SNPs | Marks | Paths | |
| YRI | 4.9 (0.2) | 1.0 (0.0) | 7.4 (0.3) | 28.4 (1.1) | 1.8 (0.1) | 158.4 (6.0) | 64.2 (2.4) | 6.3 (0.2) | 765.5 (29.0) |
| CEU | 7.4 (0.3) | 1.0 (0.0) | 10.6 (0.4) | 30.1 (1.1) | 1.3 (0.0) | 90.1 (3.3) | 59.5 (2.2) | 2.8 (0.1) | 269.6 (9.8) |