Table 2.
Percent identity of CEVA-NBRI16 isolate at the level of nucleotide and its deduced amino acid sequence of full-length genome and polyprotein, respectively, with other full length potyviruses (for which complete genome sequences are available)
| GenBank accession | Virus | Isolate | Location | Percent identity | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Complete genome (polypeptide) | Open reading frames | ||||||||||||||
| P1 | HC-Pro | P3 | PIPO | 6K1 | CI | 6K2 | VPg | NIa | NIb | CP | |||||
| NC_017977 | CEVA | Marijiniup7-1 | Australia | 93 (94) | 97 (95) | 97 (96) | 97 (94) | – | 92 (86) | 97 (96) | 87 (78) | 96 (90) | 99 (97) | 88 (93) | 84 (94) |
| JQ723475 | CEVA | Marijiniup7-2 | Australia | 93 (94) | 97 (95) | 97 (96) | 97 (94) | – | 92 (86) | 97 (96) | 87 (78) | 96 (90) | 99 (97) | 88 (93) | 84 (94) |
| AM158908 | NYSV | Zhangzhou-1 | China | 90 (97) | 99 (100) | 86 (93) | 98 (99) | 99 (100) | 99 (100) | 83 (96) | 77 (90) | 87 (97) | 95 (98) | 92 (96) | 95 (97) |
| NC_011541 | NYSV | Zhangzhou-2 | China | 90 (97) | 99 (100) | 86 (93) | 98 (99) | 99 (100) | 99 (100) | 83 (96) | 77 (90) | 87 (97) | 95 (98) | 92 (96) | 95 (97) |
| JQ911732 | NYSV | ZZ-2 | China | 59 (78) | 60 (82) | 63 (83) | 60 (66) | 56 (83) | 52 (63) | 70 (88) | 61 (71) | 68 (82) | 69 (86) | 67 (84) | 71 (82) |
| JQ395042 | NYSV | Marijiniup 3 | Australia | 58 (78) | 35 (42) | 67 (84) | 54 (59) | 53 (81) | 69 (84) | 70 (88) | 60 (83) | 65 (85) | 72 (90) | 69 (85) | 71 (81) |
| JQ326210 | NLSYV | Zhangzhou | China | 55 (74) | 33 (38) | 65 (81) | 55 (66) | 51 (77) | 71 (78) | 65 (86) | 64 (77) | 71 (87) | 71 (85) | 63 (80) | 68 (76) |
| KC691259 | NLSYV | Marijiniup8 | Australia | 54 (75) | 32 (36) | 64 (81) | 56 (66) | 49 (69) | 63 (78) | 67 (85) | 68 (81) | 67 (86) | 66 (84) | 64 (79) | 68 (75) |
| JX156421 | NLSYV | Marijiniup9 | Australia | 54 (75) | 35 (39) | 67 (81) | 56 (66) | 49 (69) | 73 (78) | 65 (86) | 66 (79) | 69 (87) | 68 (85) | 65 (79) | 68 (75) |
| AJ316084 | ScaMV | – | China | 43 (63) | 25 (22) | 56 (65) | 41 (50) | 44 (64) | 60 (67) | 53 (72) | 45 (54) | 61 (71) | 57 (71) | 58 (71) | 58 (69) |
| NC_003399 | ScaMV | – | China | 43 (63) | 25 (22) | 56 (65) | 41 (50) | 44 (64) | 60 (67) | 53 (72) | 45 (54) | 61 (71) | 57 (71) | 58 (71) | 58 (69) |
| AB701735 | TuMV | TIGD | – | 42 (59) | 15 (15) | 58 (66) | 25 (36) | 41 (60) | 56 (76) | 55 (71) | 48 (50) | 53 (67) | 60 (73) | 62 (73) | 64 (67) |
| AB989658 | TuMV | NZ403B | New Zealand | 39 (60) | 21 (23) | 55 (66) | 30 (36) | 40 (58) | 64 (78) | 55 (71) | 54 (50) | 54 (67) | 59 (73) | 59 (74) | 60 (66) |
| NC_002509 | TuMV | – | – | 41 (59) | 20 (19) | 53 (66) | 31 (34) | 40 (58) | 64 (76) | 55 (70) | 50 (58) | 56 (69) | 57 (71) | 55 (73) | 65 (67) |
| NC_000947 | JYMV | – | – | 40 (57) | 19 (19) | 53 (63) | 40 (38) | 39 (62) | 58 (67) | 55 (68) | 52 (43) | 55 (65) | 50 (60) | 55 (69) | 56 (64) |
| NC_014790 | PWV | PWV-MU2 | Australia | 25 (42) | 13 (13) | 35 (45) | 19 (20) | 10 (40) | 23 (32) | 44 (54) | 40 (35) | 37 (47) | 37 (51) | 44 (57) | 50 (59) |